This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bv8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:03, 20 October 2021) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bv8.jpg|left|200px]]<br /><applet load="3bv8" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3bv8, resolution 1.750&Aring;" />
 
-
'''Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus'''<br />
 
-
==About this Structure==
+
==Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus==
-
3BV8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_mu50 Staphylococcus aureus subsp. aureus mu50] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+A+101'>AC1</scene> and <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+102'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA].
+
<StructureSection load='3bv8' size='340' side='right'caption='[[3bv8]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Staphylococcus aureus subsp. aureus mu50]]
+
<table><tr><td colspan='2'>[[3bv8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staam Staam]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BV8 FirstGlance]. <br>
-
[[Category: Clancy, S.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[Category: Cuff, M.E.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Duggan, E.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dapD, SAV1397 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=158878 STAAM])</td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bv8 OCA], [https://pdbe.org/3bv8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bv8 RCSB], [https://www.ebi.ac.uk/pdbsum/3bv8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bv8 ProSAT], [https://www.topsan.org/Proteins/MCSG/3bv8 TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+
</table>
-
[[Category: GOL]]
+
== Function ==
-
[[Category: NA]]
+
[[https://www.uniprot.org/uniprot/DAPH_STAAM DAPH_STAAM]] Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.[HAMAP-Rule:MF_01691]
-
[[Category: acetyltransferase]]
+
== Evolutionary Conservation ==
-
[[Category: mcsg]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: midwest center for structural genomics]]
+
Check<jmol>
-
[[Category: pfam08503]]
+
<jmolCheckbox>
-
[[Category: protein structure initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bv8_consurf.spt"</scriptWhenChecked>
-
[[Category: psi-2]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 6 17:26:43 2008''
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bv8 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Staam]]
 +
[[Category: Clancy, S]]
 +
[[Category: Cuff, M E]]
 +
[[Category: Duggan, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Acetyltransferase]]
 +
[[Category: Mcsg]]
 +
[[Category: Pfam08503]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Transferase]]

Current revision

Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus

PDB ID 3bv8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools