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4ai4

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[[Image:4ai4.jpg|left|200px]]
 
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==crystal structure of E38Q mutant of 3-methyladenine DNA glycosylase I from Staphylococcus aureus==
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The line below this paragraph, containing "STRUCTURE_4ai4", creates the "Structure Box" on the page.
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<StructureSection load='4ai4' size='340' side='right'caption='[[4ai4]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[4ai4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_MSSA476 Staphylococcus aureus subsp. aureus MSSA476]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AI4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AI4 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_4ai4| PDB=4ai4 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ai4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ai4 OCA], [https://pdbe.org/4ai4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ai4 RCSB], [https://www.ebi.ac.uk/pdbsum/4ai4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ai4 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The removal of chemically damaged DNA bases such as 3-methyladenine (3-MeA) is an essential process in all living organisms and is catalyzed by the enzyme 3-MeA DNA glycosylase I. A key question is how the enzyme selectively recognizes the alkylated 3-MeA over the much more abundant adenine. The crystal structures of native and Y16F-mutant 3-MeA DNA glycosylase I from Staphylococcus aureus in complex with 3-MeA are reported to 1.8 and 2.2 A resolution, respectively. Isothermal titration calorimetry shows that protonation of 3-MeA decreases its binding affinity, confirming previous fluorescence studies that show that charge-charge recognition is not critical for the selection of 3-MeA over adenine. It is hypothesized that the hydrogen-bonding pattern of Glu38 and Tyr16 of 3-MeA DNA glycosylase I with a particular tautomer unique to 3-MeA contributes to recognition and selection.
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===crystal structure of E38Q mutant of 3-methyladenine DNA glycosylase I from Staphylococcus aureus===
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A model for 3-methyladenine recognition by 3-methyladenine DNA glycosylase I (TAG) from Staphylococcus aureus.,Zhu X, Yan X, Carter LG, Liu H, Graham S, Coote PJ, Naismith J Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jun 1;68(Pt 6):610-5. Epub, 2012 May 22. PMID:22684054<ref>PMID:22684054</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4ai4" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[4ai4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_mssa476 Staphylococcus aureus subsp. aureus mssa476]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AI4 OCA].
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*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
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[[Category: DNA-3-methyladenine glycosylase I]]
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== References ==
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[[Category: Staphylococcus aureus subsp. aureus mssa476]]
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<references/>
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[[Category: Naismith, J H.]]
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__TOC__
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[[Category: Zhu, X.]]
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</StructureSection>
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[[Category: Dna repair]]
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[[Category: Large Structures]]
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[[Category: Hydrolase]]
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[[Category: Staphylococcus aureus subsp. aureus MSSA476]]
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[[Category: Naismith JH]]
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[[Category: Zhu X]]

Current revision

crystal structure of E38Q mutant of 3-methyladenine DNA glycosylase I from Staphylococcus aureus

PDB ID 4ai4

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