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2otb

From Proteopedia

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[[Image:2otb.png|left|200px]]
 
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==Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state==
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The line below this paragraph, containing "STRUCTURE_2otb", creates the "Structure Box" on the page.
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<StructureSection load='2otb' size='340' side='right'caption='[[2otb]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTB FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>
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{{STRUCTURE_2otb| PDB=2otb | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [https://pdbe.org/2otb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [https://www.ebi.ac.uk/pdbsum/2otb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otb ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GFPL_CLASP GFPL_CLASP]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otb_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otb ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Fluorescent protein (FP) variants that can be reversibly converted between fluorescent and nonfluorescent states have proven to be a catalyst for innovation in the field of fluorescence microscopy. However, the structural basis of the process remains poorly understood. High-resolution structures of a FP derived from Clavularia in both the fluorescent and the light-induced nonfluorescent states reveal that the rapid and complete loss of fluorescence observed upon illumination with 450-nm light results from cis-trans isomerization of the chromophore. The photoinduced change in configuration from the well ordered cis isomer to the highly nonplanar and disordered trans isomer is accompanied by a dramatic rearrangement of internal side chains. Taken together, the structures provide an explanation for the loss of fluorescence upon illumination, the slow light-independent recovery, and the rapid light-induced recovery of fluorescence. The fundamental mechanism appears to be common to all of the photoactivatable and reversibly photoswitchable FPs reported to date.
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===Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state===
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Structural basis for reversible photobleaching of a green fluorescent protein homologue.,Henderson JN, Ai HW, Campbell RE, Remington SJ Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6672-7. Epub 2007 Apr 9. PMID:17420458<ref>PMID:17420458</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_17420458}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2otb" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17420458 is the PubMed ID number.
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{{ABSTRACT_PUBMED_17420458}}
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==About this Structure==
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[[2otb]] is a 2 chain structure of [[Alyssa Marsico/Sandbox 1]], [[Devon McCarthy/Sandbox 1]], [[Green Fluorescent Protein]], [[Sandbox104]] and [[User:Joanne Lau/Sandbox 5]] with sequence from [http://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA].
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==See Also==
==See Also==
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*[[Alyssa Marsico/Sandbox 1]]
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*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
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*[[Devon McCarthy/Sandbox 1]]
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== References ==
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*[[Green Fluorescent Protein]]
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<references/>
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*[[Sandbox104]]
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__TOC__
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*[[User:Joanne Lau/Sandbox 5]]
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</StructureSection>
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[[Category: Clavularia sp]]
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==Reference==
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[[Category: Large Structures]]
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<ref group="xtra">PMID:017420458</ref><references group="xtra"/>
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[[Category: Ai H]]
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[[Category: Clavularia sp.]]
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[[Category: Campbell RE]]
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[[Category: Ai, H.]]
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[[Category: Henderson JN]]
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[[Category: Campbell, R E.]]
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[[Category: Remington SJ]]
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[[Category: Henderson, J N.]]
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[[Category: Remington, S J.]]
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[[Category: Beta can]]
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[[Category: Fluorescent protein]]
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Current revision

Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state

PDB ID 2otb

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