2vkp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2vkp" size="350" color="white" frame="true" align="right" spinBox="true" caption="2vkp, resolution 1.90&Aring;" /> '''CRYSTAL STRUCTURE OF...)
Current revision (01:26, 21 November 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2vkp.jpg|left|200px]]<br /><applet load="2vkp" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2vkp, resolution 1.90&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF BTB DOMAIN FROM BTBD6'''<br />
 
-
==About this Structure==
+
==Crystal structure of BTB domain from BTBD6==
-
2VKP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=K:'>K</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mse+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Mse+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Mse+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Mse+Binding+Site+For+Chain+A'>AC4</scene>, <scene name='pdbsite=AC5:Mse+Binding+Site+For+Chain+B'>AC5</scene>, <scene name='pdbsite=AC6:Mse+Binding+Site+For+Chain+B'>AC6</scene>, <scene name='pdbsite=AC7:Mse+Binding+Site+For+Chain+B'>AC7</scene>, <scene name='pdbsite=AC8:Mse+Binding+Site+For+Chain+B'>AC8</scene>, <scene name='pdbsite=AC9:K+Binding+Site+For+Chain+B'>AC9</scene> and <scene name='pdbsite=BC1:Edo+Binding+Site+For+Chain+B'>BC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VKP OCA].
+
<StructureSection load='2vkp' size='340' side='right'caption='[[2vkp]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2vkp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VKP FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vkp OCA], [https://pdbe.org/2vkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vkp RCSB], [https://www.ebi.ac.uk/pdbsum/2vkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vkp ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/2vkp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vkp ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Arrowsmith, C.H.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Bunkoczi, G.]]
+
[[Category: Bunkoczi G]]
-
[[Category: Cooper, C.D.O.]]
+
[[Category: Cooper CDO]]
-
[[Category: Delft, F.Von.]]
+
[[Category: Edwards A]]
-
[[Category: Edwards, A.]]
+
[[Category: Elkins JM]]
-
[[Category: Elkins, J.M.]]
+
[[Category: Filippakopoulos P]]
-
[[Category: Filippakopoulos, P.]]
+
[[Category: Gileadi O]]
-
[[Category: Gileadi, O.]]
+
[[Category: Knapp S]]
-
[[Category: Knapp, S.]]
+
[[Category: Pike ACW]]
-
[[Category: Pike, A.C.W.]]
+
[[Category: Salah E]]
-
[[Category: Salah, E.]]
+
[[Category: Weigelt J]]
-
[[Category: Weigelt, J.]]
+
[[Category: Von Delft F]]
-
[[Category: EDO]]
+
-
[[Category: K]]
+
-
[[Category: protein-binding]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 13 08:21:58 2008''
+

Current revision

Crystal structure of BTB domain from BTBD6

PDB ID 2vkp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2vkp"
Personal tools