3j0a

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[[Image:3j0a.png|left|200px]]
 
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==Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction==
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The line below this paragraph, containing "STRUCTURE_3j0a", creates the "Structure Box" on the page.
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<SX load='3j0a' size='340' side='right' viewer='molstar' caption='[[3j0a]], [[Resolution|resolution]] 26.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3j0a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J0A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3J0A FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 26&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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{{STRUCTURE_3j0a| PDB=3j0a | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3j0a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j0a OCA], [https://pdbe.org/3j0a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3j0a RCSB], [https://www.ebi.ac.uk/pdbsum/3j0a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3j0a ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/TLR5_HUMAN TLR5_HUMAN] Disease susceptibility is associated with variations affecting the gene represented in this entry.
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== Function ==
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[https://www.uniprot.org/uniprot/TLR5_HUMAN TLR5_HUMAN] Participates in the innate immune response to microbial agents. Mediates detection of bacterial flagellins. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.<ref>PMID:11323673</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The structure of full-length human TLR5 determined by electron microscopy single-particle image reconstruction at 26A resolution shows that TLR5 forms an asymmetric homodimer via ectodomain interactions. The structure shows that like TLR9, TLR5 dimerizes in the absence of ligand. The asymmetry of the dimer suggests that TLR5 may recognize two flagellin molecules cooperatively to establish an optimal flagellin response threshold. A TLR5 homology model was generated and fitted into the electron microscopy structure. All seven predicted N-linked glycosylation sites are exposed on the molecular surface, away from the dimer interface. Glycosylation at the first five sites was confirmed by tandem mass spectrometry. Two aspartate residues proposed to interact with flagellin (Asp294 and Asp366) are sterically occluded by a glycan at position 342. In contrast, the central region of the ectodomains near the dimer interface is unobstructed by glycans. Ligand binding in this region would be consistent with the ligand binding sites of other TLRs.
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===Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction===
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Toll-like receptor 5 forms asymmetric dimers in the absence of flagellin.,Zhou K, Kanai R, Lee P, Wang HW, Modis Y J Struct Biol. 2011 Dec 8. PMID:22173220<ref>PMID:22173220</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3j0a" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_22173220}}, adds the Publication Abstract to the page
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*[[Toll-like Receptor 3D structures|Toll-like Receptor 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22173220 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22173220}}
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__TOC__
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</SX>
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==About this Structure==
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[[3j0a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J0A OCA].
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==Reference==
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<ref group="xtra">PMID:022173220</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Kanai, R.]]
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[[Category: Large Structures]]
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[[Category: Lee, P.]]
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[[Category: Kanai R]]
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[[Category: Modis, Y.]]
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[[Category: Lee P]]
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[[Category: Wang, H W.]]
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[[Category: Modis Y]]
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[[Category: Zhou, K.]]
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[[Category: Wang HW]]
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[[Category: Asymmetric homodimer]]
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[[Category: Zhou K]]
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[[Category: Glycoprotein]]
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[[Category: Immune system]]
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[[Category: Leucine-rich repeat]]
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[[Category: Membrane protein]]
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[[Category: Toll-like receptor 5]]
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Current revision

Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction

3j0a, resolution 26.00Å

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