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3t4v

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[[Image:3t4v.jpg|left|200px]]
 
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==Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(2-napthalenemethyl)-L-cysteine==
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The line below this paragraph, containing "STRUCTURE_3t4v", creates the "Structure Box" on the page.
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<StructureSection load='3t4v' size='340' side='right'caption='[[3t4v]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3t4v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T4V FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.732&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MD3:N-(CARBOXYCARBONYL)-S-(NAPHTHALEN-2-YLMETHYL)-L-CYSTEINE'>MD3</scene></td></tr>
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{{STRUCTURE_3t4v| PDB=3t4v | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4v OCA], [https://pdbe.org/3t4v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t4v RCSB], [https://www.ebi.ac.uk/pdbsum/3t4v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t4v ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ALKB_ECOLI ALKB_ECOLI] Dioxygenase that repairs alkylated DNA and RNA containing 3-methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents).<ref>PMID:12226668</ref> <ref>PMID:12594517</ref> <ref>PMID:16482161</ref> <ref>PMID:19706517</ref> <ref>PMID:21068844</ref> <ref>PMID:20084272</ref>
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===Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(2-napthalenemethyl)-L-cysteine===
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==See Also==
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*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_22263962}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 22263962 is the PubMed ID number.
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</StructureSection>
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[[Category: Escherichia coli K-12]]
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{{ABSTRACT_PUBMED_22263962}}
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[[Category: Large Structures]]
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[[Category: Aik WS]]
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==About this Structure==
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[[Category: McDonough MA]]
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[[3t4v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4V OCA].
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[[Category: Schofield CJ]]
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==Reference==
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<ref group="xtra">PMID:022263962</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
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[[Category: Aik, W S.]]
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[[Category: McDonough, M A.]]
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[[Category: Schofield, C J.]]
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[[Category: Double-stranded beta-helix]]
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[[Category: Nucleic acid demethylase]]
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[[Category: Oxidoreductase-oxidoreductase inhibitor complex]]
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Current revision

Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(2-napthalenemethyl)-L-cysteine

PDB ID 3t4v

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