2liw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:25, 26 March 2025) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2liw.png|left|200px]]
 
-
<!--
+
==NMR structure of HMG-ACPI domain from CurA module from Lyngbya majuscula==
-
The line below this paragraph, containing "STRUCTURE_2liw", creates the "Structure Box" on the page.
+
<StructureSection load='2liw' size='340' side='right'caption='[[2liw]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2liw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lyngbya_majuscula Lyngbya majuscula]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LIW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MAH:3-HYDROXY-3-METHYL-GLUTARIC+ACID'>MAH</scene>, <scene name='pdbligand=PNS:4-PHOSPHOPANTETHEINE'>PNS</scene></td></tr>
-
{{STRUCTURE_2liw| PDB=2liw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2liw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2liw OCA], [https://pdbe.org/2liw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2liw RCSB], [https://www.ebi.ac.uk/pdbsum/2liw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2liw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6DNF2_9CYAN Q6DNF2_9CYAN]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Polyketide synthases (PKS) and non-ribosomal peptide synthetases (NRPS) are large multidomain proteins present in microorganisms that produce bioactive compounds. Curacin A is such a bioactive compound with potent anti-proliferative activity. During its biosynthesis the growing substrate is bound covalently to an acyl carrier protein (ACP) that is able to access catalytic sites of neighboring domains for chain elongation and modification. While ACP domains usually occur as monomers, the curacin A cluster codes for a triplet ACP(ACP&lt;sub&gt;I&lt;/sub&gt;-ACP&lt;sub&gt;II&lt;/sub&gt;-ACP&lt;sub&gt;III&lt;/sub&gt;) within the CurA PKS module. We have determined the structure of the isolated holo ACP&lt;sub&gt;I&lt;/sub&gt; and show that the ACPs are independent of each other within this tridomain system. In addition, we have determined the structure of the 3-hydroxyl-3-methylglutaryl-loaded holo-ACP&lt;sub&gt;I&lt;/sub&gt;, which is the substrate for the unique halogenase (Hal) domain embedded within the CurA module. We have identified the interaction surface of both proteins using mutagenesis and MALDI-based identification of product formation. Amino acids affecting product formation are located on helices II and III of ACP&lt;sub&gt;I&lt;/sub&gt; and form a contiguous surface. Since the CurA Hal accepts substrate only when presented by one of the ACPs within the ACP&lt;sub&gt;I&lt;/sub&gt;-ACP&lt;sub&gt;II&lt;/sub&gt;-ACP&lt;sub&gt;III&lt;/sub&gt; tridomain, our data provide insight into the specificity of the chlorination reaction.
-
===NMR structure of HMG-ACPI domain from CurA module from Lyngbya majuscula===
+
Characterization of molecular interactions between ACP and halogenase domains in the curacin A polyketide synthase.,Busche AE, Gottstein D, Hein C, Ripin N, Pader I, Tufar P, Eisman EB, Gu L, Walsh CT, Loehr F, Sherman DH, Guntert P, Dotsch V ACS Chem Biol. 2011 Nov 21. PMID:22103656<ref>PMID:22103656</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22103656}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2liw" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 22103656 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_22103656}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[2liw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lyngbya_majuscula Lyngbya majuscula]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LIW OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022103656</ref><references group="xtra"/>
+
[[Category: Lyngbya majuscula]]
[[Category: Lyngbya majuscula]]
-
[[Category: Busche, A E.]]
+
[[Category: Busche AE]]
-
[[Category: Dotsch, V.]]
+
[[Category: Dotsch V]]
-
[[Category: Eisman, E B.]]
+
[[Category: Eisman EB]]
-
[[Category: Gottstein, D.]]
+
[[Category: Gottstein D]]
-
[[Category: Gu, L.]]
+
[[Category: Gu L]]
-
[[Category: Guntert, P.]]
+
[[Category: Guntert P]]
-
[[Category: Hein, C.]]
+
[[Category: Hein C]]
-
[[Category: Loehr, F.]]
+
[[Category: Loehr F]]
-
[[Category: Pader, I.]]
+
[[Category: Pader I]]
-
[[Category: Ripin, N.]]
+
[[Category: Ripin N]]
-
[[Category: Sherman, D H.]]
+
[[Category: Sherman DH]]
-
[[Category: Tufar, P.]]
+
[[Category: Tufar P]]
-
[[Category: Walsh, C T.]]
+
[[Category: Walsh CT]]
-
[[Category: Pk]]
+
-
[[Category: Transferase]]
+

Current revision

NMR structure of HMG-ACPI domain from CurA module from Lyngbya majuscula

PDB ID 2liw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools