4dyu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:47, 14 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4dyu.jpg|left|200px]]
 
-
<!--
+
==The crystal structure of DNA starvation/stationary phase protection protein Dps from Yersinia pestis KIM 10==
-
The line below this paragraph, containing "STRUCTURE_4dyu", creates the "Structure Box" on the page.
+
<StructureSection load='4dyu' size='340' side='right'caption='[[4dyu]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4dyu]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_KIM10+ Yersinia pestis KIM10+]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DYU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DYU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_4dyu| PDB=4dyu | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dyu OCA], [https://pdbe.org/4dyu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dyu RCSB], [https://www.ebi.ac.uk/pdbsum/4dyu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dyu ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPS_YERPE DPS_YERPE] During stationary phase, binds the chromosome non-specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction.[HAMAP-Rule:MF_01441]
-
===The crystal structure of DNA starvation/stationary phase protection protein Dps from Yersinia pestis KIM 10===
+
==See Also==
-
 
+
*[[Ferritin 3D structures|Ferritin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[4dyu]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DYU OCA].
+
[[Category: Large Structures]]
-
[[Category: Yersinia pestis]]
+
[[Category: Yersinia pestis KIM10+]]
-
[[Category: Anderson, W F.]]
+
[[Category: Anderson WF]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Gu M]]
-
[[Category: Gu, M.]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Kwon K]]
-
[[Category: Kwon, K.]]
+
[[Category: Tan K]]
-
[[Category: Tan, K.]]
+
-
[[Category: Csgid]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: The center for structural genomics of infectious disease]]
+

Current revision

The crystal structure of DNA starvation/stationary phase protection protein Dps from Yersinia pestis KIM 10

PDB ID 4dyu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4dyu"
Personal tools