2lkl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:45, 15 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2lkl.png|left|200px]]
 
-
<!--
+
==Structure of the core intracellular domain of PfEMP1==
-
The line below this paragraph, containing "STRUCTURE_2lkl", creates the "Structure Box" on the page.
+
<StructureSection load='2lkl' size='340' side='right'caption='[[2lkl]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2lkl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LKL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LKL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lkl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lkl OCA], [https://pdbe.org/2lkl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lkl RCSB], [https://www.ebi.ac.uk/pdbsum/2lkl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lkl ProSAT]</span></td></tr>
-
{{STRUCTURE_2lkl| PDB=2lkl | SCENE= }}
+
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Plasmodium falciparum-infected red blood cells adhere to endothelial cells, thereby obstructing the microvasculature. Erythrocyte adherence is directly associated with severe malaria and increased disease lethality, and it is mediated by the PfEMP1 family. PfEMP1 clustering in knob-like protrusions on the erythrocyte membrane is critical for cytoadherence, however the molecular mechanisms behind this system remain elusive. Here, we show that the intracellular domains of the PfEMP1 family (ATS) share a unique molecular architecture, which comprises a minimal folded core and extensive flexible elements. A conserved flexible segment at the ATS center is minimally restrained by the folded core. Yeast-two-hybrid data and a novel sequence analysis method suggest that this central segment contains a conserved protein interaction epitope. Interestingly, ATS in solution fails to bind the parasite knob-associated histidine-rich protein (KAHRP), an essential cytoadherence component. Instead, we demonstrate that ATS associates with PFI1780w, a member of the Plasmodium helical interspersed sub-telomeric (PHIST) family. PHIST domains are widespread in exported parasite proteins, however this is the first specific molecular function assigned to any variant of this family. We propose that PHIST domains facilitate protein interactions, and that the conserved ATS epitope may be targeted to disrupt the parasite cytoadherence system.
-
===Structure of the core intracellular domain of PfEMP1===
+
Structural Analysis of the Plasmodium falciparum Erythrocyte Membrane Protein 1 (PfEMP1) Intracellular Domain Reveals a Conserved Interaction Epitope.,Mayer C, Slater L, Erat MC, Konrat R, Vakonakis I J Biol Chem. 2012 Mar 2;287(10):7182-9. Epub 2012 Jan 16. PMID:22249178<ref>PMID:22249178</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22249178}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2lkl" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 22249178 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_22249178}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[2lkl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LKL OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022249178</ref><references group="xtra"/>
+
[[Category: Plasmodium falciparum]]
[[Category: Plasmodium falciparum]]
-
[[Category: Erat, M C.]]
+
[[Category: Erat MC]]
-
[[Category: Vakonakis, I.]]
+
[[Category: Vakonakis I]]
-
[[Category: Cell adhesion]]
+
-
[[Category: Helical protein]]
+

Current revision

Structure of the core intracellular domain of PfEMP1

PDB ID 2lkl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools