This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pes

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:09, 21 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pes.png|left|200px]]
 
-
<!--
+
==Urate Oxidase in complex with tris-dipicolinate Lutetium==
-
The line below this paragraph, containing "STRUCTURE_2pes", creates the "Structure Box" on the page.
+
<StructureSection load='2pes' size='340' side='right'caption='[[2pes]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pes]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PES OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PES FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene>, <scene name='pdbligand=LU:LUTETIUM+(III)+ION'>LU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene></td></tr>
-
{{STRUCTURE_2pes| PDB=2pes | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pes FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pes OCA], [https://pdbe.org/2pes PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pes RCSB], [https://www.ebi.ac.uk/pdbsum/2pes PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pes ProSAT]</span></td></tr>
-
 
+
</table>
-
===Urate Oxidase in complex with tris-dipicolinate Lutetium===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20606256}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20606256 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pe/2pes_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20606256}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[2pes]] is a 1 chain structure of [[Urate Oxidase]] with sequence from [http://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PES OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pes ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Urate Oxidase]]
+
*[[Urate oxidase 3D structures|Urate oxidase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:020606256</ref><references group="xtra"/>
+
[[Category: Aspergillus flavus]]
[[Category: Aspergillus flavus]]
-
[[Category: Urate oxidase]]
+
[[Category: Large Structures]]
-
[[Category: Kahn, R.]]
+
[[Category: Kahn R]]
-
[[Category: Pompidor, G.]]
+
[[Category: Pompidor G]]
-
[[Category: Vicat, J.]]
+
[[Category: Vicat J]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Urate oxidase tris-dipicolinate lutetium 8-azaxanthin x-ray]]
+

Current revision

Urate Oxidase in complex with tris-dipicolinate Lutetium

PDB ID 2pes

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pes"
Personal tools