This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gq9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:55, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gq9.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in an apo form==
-
The line below this paragraph, containing "STRUCTURE_3gq9", creates the "Structure Box" on the page.
+
<StructureSection load='3gq9' size='340' side='right'caption='[[3gq9]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gq9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_virus_phi29 Bacillus virus phi29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GQ9 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NHE:2-[N-CYCLOHEXYLAMINO]ETHANE+SULFONIC+ACID'>NHE</scene></td></tr>
-
{{STRUCTURE_3gq9| PDB=3gq9 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gq9 OCA], [https://pdbe.org/3gq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gq9 RCSB], [https://www.ebi.ac.uk/pdbsum/3gq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gq9 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in an apo form===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/FIB12_BPPH2 FIB12_BPPH2] Structural component of the 12 appendages that hang from the lower collar. Adhesion protein that binds to the host cell surface during virus attachment and mediates teichoic acids degradation.<ref>PMID:7241648</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_19450535}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19450535 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/3gq9_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_19450535}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3gq9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_phi29 Bacillus phage phi29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQ9 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gq9 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:019450535</ref><references group="xtra"/>
+
<references/>
-
[[Category: Bacillus phage phi29]]
+
__TOC__
-
[[Category: Rossmann, M G.]]
+
</StructureSection>
-
[[Category: Xiang, Y.]]
+
[[Category: Bacillus virus phi29]]
-
[[Category: Beta helix]]
+
[[Category: Large Structures]]
-
[[Category: Viral protein]]
+
[[Category: Rossmann MG]]
 +
[[Category: Xiang Y]]

Current revision

Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in an apo form

PDB ID 3gq9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gq9"
Personal tools