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4ae4

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[[Image:4ae4.jpg|left|200px]]
 
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==The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a novel SOUBA domain==
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The line below this paragraph, containing "STRUCTURE_4ae4", creates the "Structure Box" on the page.
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<StructureSection load='4ae4' size='340' side='right'caption='[[4ae4]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[4ae4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AE4 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NHE:2-[N-CYCLOHEXYLAMINO]ETHANE+SULFONIC+ACID'>NHE</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=MSO:SELENOMETHIONINE+SELENOXIDE'>MSO</scene></td></tr>
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{{STRUCTURE_4ae4| PDB=4ae4 | SCENE= }}
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1wgn|1wgn]]</div></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ae4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ae4 OCA], [https://pdbe.org/4ae4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ae4 RCSB], [https://www.ebi.ac.uk/pdbsum/4ae4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ae4 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The endosomal sorting complexes required for transport (ESCRTs) facilitate endosomal sorting of ubiquitinated cargo, MVB biogenesis, late stages of cytokinesis, and retroviral budding. Here we show that ubiquitin associated protein 1 (UBAP1), a subunit of human ESCRT-I, coassembles in a stable 1:1:1:1 complex with Vps23/TSG101, VPS28, and VPS37. The X-ray crystal structure of the C-terminal region of UBAP1 reveals a domain that we describe as a solenoid of overlapping UBAs (SOUBA). NMR analysis shows that each of the three rigidly arranged overlapping UBAs making up the SOUBA interact with ubiquitin. We demonstrate that UBAP1-containing ESCRT-I is essential for degradation of antiviral cell-surface proteins, such as tetherin (BST-2/CD317), by viral countermeasures, namely, the HIV-1 accessory protein Vpu and the Kaposi sarcoma-associated herpesvirus (KSHV) ubiquitin ligase K5.
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===The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a novel SOUBA domain===
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The UBAP1 Subunit of ESCRT-I Interacts with Ubiquitin via a SOUBA Domain.,Agromayor M, Soler N, Caballe A, Kueck T, Freund SM, Allen MD, Bycroft M, Perisic O, Ye Y, McDonald B, Scheel H, Hofmann K, Neil SJ, Martin-Serrano J, Williams RL Structure. 2012 Mar 7;20(3):414-28. PMID:22405001<ref>PMID:22405001</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_22405001}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 4ae4" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 22405001 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22405001}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Human]]
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[[4ae4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AE4 OCA].
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[[Category: Large Structures]]
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[[Category: Agromayor, M]]
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==Reference==
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[[Category: Allen, M D]]
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<ref group="xtra">PMID:022405001</ref><references group="xtra"/>
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[[Category: Bycroft, M]]
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[[Category: Homo sapiens]]
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[[Category: Caballe, A]]
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[[Category: Agromayor, M.]]
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[[Category: Freund, S M]]
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[[Category: Allen, M D.]]
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[[Category: Hofmann, K]]
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[[Category: Bycroft, M.]]
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[[Category: Kueck, T]]
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[[Category: Caballe, A.]]
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[[Category: Martin-Serrano, J]]
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[[Category: Freund, S M.]]
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[[Category: McDonald, B]]
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[[Category: Hofmann, K.]]
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[[Category: Neil, S J.D]]
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[[Category: Kueck, T.]]
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[[Category: Perisic, O]]
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[[Category: Martin-Serrano, J.]]
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[[Category: Scheel, H]]
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[[Category: Mcdonald, B.]]
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[[Category: Soler, N]]
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[[Category: Neil, S J.D.]]
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[[Category: Williams, R L]]
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[[Category: Perisic, O.]]
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[[Category: Ye, Y]]
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[[Category: Scheel, H.]]
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[[Category: Soler, N.]]
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[[Category: Williams, R L.]]
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[[Category: Ye, Y.]]
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[[Category: Endosomal sorting]]
[[Category: Endosomal sorting]]
[[Category: Hiv-1]]
[[Category: Hiv-1]]

Current revision

The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a novel SOUBA domain

PDB ID 4ae4

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