2ybb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:32, 21 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ybb.png|left|200px]]
 
-
<!--
+
==Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)==
-
The line below this paragraph, containing "STRUCTURE_2ybb", creates the "Structure Box" on the page.
+
<SX load='2ybb' size='340' side='right' viewer='molstar' caption='[[2ybb]], [[Resolution|resolution]] 19.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ybb]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YBB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YBB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 19&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=HEA:HEME-A'>HEA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=SMA:STIGMATELLIN+A'>SMA</scene>, <scene name='pdbligand=UQ1:UBIQUINONE-1'>UQ1</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_2ybb| PDB=2ybb | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ybb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ybb OCA], [https://pdbe.org/2ybb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ybb RCSB], [https://www.ebi.ac.uk/pdbsum/2ybb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ybb ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NQO1_THET8 NQO1_THET8] NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient required for the synthesis of ATP. The nqo1 subunit contains the NADH-binding site and the primary electron acceptor FMN.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The respiratory chain in the inner mitochondrial membrane contains three large multi-enzyme complexes that together establish the proton gradient for ATP synthesis, and assemble into a supercomplex. A 19-A 3D map of the 1.7-MDa amphipol-solubilized supercomplex I(1)III(2)IV(1) from bovine heart obtained by single-particle electron cryo-microscopy reveals an amphipol belt replacing the membrane lipid bilayer. A precise fit of the X-ray structures of complex I, the complex III dimer, and monomeric complex IV indicates distances of 13 nm between the ubiquinol-binding sites of complexes I and III, and of 10-11 nm between the cytochrome c binding sites of complexes III and IV. The arrangement of respiratory chain complexes suggests two possible pathways for efficient electron transfer through the supercomplex, of which the shorter branch through the complex III monomer proximal to complex I may be preferred.
-
===Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)===
+
Arrangement of electron transport chain components in bovine mitochondrial supercomplex I(1)III(2)IV(1).,Althoff T, Mills DJ, Popot JL, Kuhlbrandt W EMBO J. 2011 Sep 9. doi: 10.1038/emboj.2011.324. PMID:21909073<ref>PMID:21909073</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2ybb" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_21909073}}, adds the Publication Abstract to the page
+
*[[Cytochrome c oxidase 3D structures|Cytochrome c oxidase 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 21909073 is the PubMed ID number.
+
*[[NADH-quinone oxidoreductase|NADH-quinone oxidoreductase]]
-
-->
+
== References ==
-
{{ABSTRACT_PUBMED_21909073}}
+
<references/>
-
 
+
__TOC__
-
==About this Structure==
+
</SX>
-
[[2ybb]] is a 48 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus], [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YBB OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021909073</ref><references group="xtra"/>
+
[[Category: Bos taurus]]
[[Category: Bos taurus]]
-
[[Category: Escherichia coli]]
+
[[Category: Large Structures]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Althoff, T.]]
+
[[Category: Althoff T]]
-
[[Category: Kuehlbrandt, W.]]
+
[[Category: Kuehlbrandt W]]
-
[[Category: Mills, D J.]]
+
[[Category: Mills DJ]]
-
[[Category: Popot, J L.]]
+
[[Category: Popot J-L]]
-
[[Category: Amphipol a8-35]]
+
-
[[Category: Mitochondria]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Random conical tilt]]
+
-
[[Category: Respiratory chain]]
+
-
[[Category: Supercomplex b]]
+

Current revision

Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)

2ybb, resolution 19.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools