3qy0

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[[Image:3qy0.png|left|200px]]
 
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==Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP==
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The line below this paragraph, containing "STRUCTURE_3qy0", creates the "Structure Box" on the page.
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<StructureSection load='3qy0' size='340' side='right'caption='[[3qy0]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3qy0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QY0 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_3qy0| PDB=3qy0 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qy0 OCA], [https://pdbe.org/3qy0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qy0 RCSB], [https://www.ebi.ac.uk/pdbsum/3qy0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qy0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BIOD_HELPY BIOD_HELPY] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring (By similarity).[HAMAP-Rule:MF_00336]
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===Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP===
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==See Also==
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*[[Dethiobiotin synthetase 3D structures|Dethiobiotin synthetase 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_22284390}}, adds the Publication Abstract to the page
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[[Category: Helicobacter pylori 26695]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22284390 is the PubMed ID number.
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[[Category: Large Structures]]
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[[Category: Chruszcz M]]
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{{ABSTRACT_PUBMED_22284390}}
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[[Category: Joachimiak A]]
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[[Category: Klimecka MM]]
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==About this Structure==
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[[Category: Minor W]]
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[[3qy0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QY0 OCA].
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[[Category: Murzyn K]]
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[[Category: Porebski PJ]]
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==Reference==
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<ref group="xtra">PMID:022284390</ref><references group="xtra"/>
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[[Category: Dethiobiotin synthase]]
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[[Category: Helicobacter pylori]]
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[[Category: Chruszcz, M.]]
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[[Category: Joachimiak, A.]]
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[[Category: Klimecka, M M.]]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Minor, W.]]
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[[Category: Murzyn, K.]]
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[[Category: Porebski, P J.]]
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[[Category: Dethiobiotin synthetase]]
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[[Category: Dtb]]
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[[Category: Ligase]]
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[[Category: Mcsg]]
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[[Category: Midwest center for structural genomic]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-biology]]
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[[Category: Structural genomic]]
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Current revision

Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP

PDB ID 3qy0

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