1ism

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[[Image:1ism.jpg|left|200px]]<br /><applet load="1ism" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ism, resolution 3.00&Aring;" />
 
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'''Crystal Structure Analysis of BST-1/CD157 complexed with nicotinamide'''<br />
 
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==Overview==
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==Crystal Structure Analysis of BST-1/CD157 complexed with nicotinamide==
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cADPR is the novel second messenger that elicits calcium release from, intracellular calcium stores and works independently of IP(3). In mammals, the ADP-ribosyl cyclase function is found in two membrane proteins, CD38, and BST-1/CD157. These enzymes, exposed extracellularly, bear cADPR, hydrolase and NAD glycohydrolase activities. In spite of its functional, importance, the structural basis of these enzymatic reactions remains, elusive. We determined the crystal structures of the extracellular region, of human BST-1 at atomic resolution in the free form and in complexes with, five substrate analogues: nicotinamide, NMN, ATPgammaS, ethenoNADP, and, ethenoNAD. The three-dimensional structural views of the reaction centre, with these ligands revealed the mode of substrate binding and the, catalytic mechanism of the multifunctional enzymatic reactions. In each, catalytic cleft of the dimeric enzyme, substrates are recognized, predominantly through van der Waals interactions with two tryptophan, residues, and thereby the N-glycosidic bond of NAD is correctly exposed, near a catalytic glutamate residue. Its carboxyl side-chain stabilizes the, catalytic intermediate of the S(N)-1 type reaction. This conformation of, the catalytic cleft also implies the mechanism of cyclization between the, adenine base and the ribose. The three key residues are invariant among, the sequences of BST-1, CD38, and Aplysia cyclase, and hence this, substrate recognition mode and catalytic scheme appear to be common in the, cyclase family.
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<StructureSection load='1ism' size='340' side='right'caption='[[1ism]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ism]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ISM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ISM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ism FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ism OCA], [https://pdbe.org/1ism PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ism RCSB], [https://www.ebi.ac.uk/pdbsum/1ism PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ism ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BST1_HUMAN BST1_HUMAN] Synthesizes cyclic ADP-ribose, a second messenger that elicits calcium release from intracellular stores. May be involved in pre-B-cell growth.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/is/1ism_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ism ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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cADPR is the novel second messenger that elicits calcium release from intracellular calcium stores and works independently of IP(3). In mammals, the ADP-ribosyl cyclase function is found in two membrane proteins, CD38 and BST-1/CD157. These enzymes, exposed extracellularly, bear cADPR hydrolase and NAD glycohydrolase activities. In spite of its functional importance, the structural basis of these enzymatic reactions remains elusive. We determined the crystal structures of the extracellular region of human BST-1 at atomic resolution in the free form and in complexes with five substrate analogues: nicotinamide, NMN, ATPgammaS, ethenoNADP, and ethenoNAD. The three-dimensional structural views of the reaction centre with these ligands revealed the mode of substrate binding and the catalytic mechanism of the multifunctional enzymatic reactions. In each catalytic cleft of the dimeric enzyme, substrates are recognized predominantly through van der Waals interactions with two tryptophan residues, and thereby the N-glycosidic bond of NAD is correctly exposed near a catalytic glutamate residue. Its carboxyl side-chain stabilizes the catalytic intermediate of the S(N)-1 type reaction. This conformation of the catalytic cleft also implies the mechanism of cyclization between the adenine base and the ribose. The three key residues are invariant among the sequences of BST-1, CD38, and Aplysia cyclase, and hence this substrate recognition mode and catalytic scheme appear to be common in the cyclase family.
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==About this Structure==
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Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.,Yamamoto-Katayama S, Ariyoshi M, Ishihara K, Hirano T, Jingami H, Morikawa K J Mol Biol. 2002 Feb 22;316(3):711-23. PMID:11866528<ref>PMID:11866528</ref>
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1ISM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=NCA:'>NCA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/NAD(+)_nucleosidase NAD(+) nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.5 3.2.2.5] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ISM OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities., Yamamoto-Katayama S, Ariyoshi M, Ishihara K, Hirano T, Jingami H, Morikawa K, J Mol Biol. 2002 Feb 22;316(3):711-23. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11866528 11866528]
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</div>
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<div class="pdbe-citations 1ism" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: NAD(+) nucleosidase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Ariyoshi M]]
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[[Category: Ariyoshi, M.]]
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[[Category: Hirano T]]
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[[Category: Hirano, T.]]
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[[Category: Ishihara K]]
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[[Category: Ishihara, K.]]
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[[Category: Jingami H]]
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[[Category: Jingami, H.]]
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[[Category: Morikawa K]]
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[[Category: Morikawa, K.]]
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[[Category: Yamamoto-Katayama S]]
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[[Category: Yamamoto-Katayama, S.]]
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[[Category: NCA]]
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[[Category: adp ribosyl cyclase]]
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[[Category: cns]]
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[[Category: nad glycohydrolase]]
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[[Category: nicotinamide]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:03:33 2008''
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Current revision

Crystal Structure Analysis of BST-1/CD157 complexed with nicotinamide

PDB ID 1ism

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