3ues

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[[Image:3ues.jpg|left|200px]]
 
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==Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis complexed with deoxyfuconojirimycin==
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The line below this paragraph, containing "STRUCTURE_3ues", creates the "Structure Box" on the page.
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<StructureSection load='3ues' size='340' side='right'caption='[[3ues]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3ues]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222_=_DSM_20088 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UES OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UES FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DFU:(2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL'>DFU</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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{{STRUCTURE_3ues| PDB=3ues | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ues FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ues OCA], [https://pdbe.org/3ues PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ues RCSB], [https://www.ebi.ac.uk/pdbsum/3ues PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ues ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B7GNN8_BIFLS B7GNN8_BIFLS]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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alpha-L-fucosyl residues attached at the non-reducing ends of glycoconjugates constitute histo-blood group antigens Lewis (Le) and ABO and play fundamental roles in various biological processes. Therefore, establishing a method for synthesizing the antigens is important for functional glycomics studies. However, regiospecific synthesis of glycosyl linkages, especially alpha-L-fucosyl linkages, is quite difficult to control both by chemists and enzymologists. Here, we generated an alpha-L-fucosynthase that specifically introduces Le(a) and Le(x) antigens into the type-1 and type-2 chains, respectively; i.e. the enzyme specifically accepts the disaccharide structures (Galbeta1-3/4GlcNAc) at the non-reducing ends and attaches a Fuc residue via an alpha-(1,4/3)-linkage to the GlcNAc. X-ray crystallographic studies revealed the structural basis of this strict regio- and acceptor specificity, which includes the induced fit movement of the catalytically important residues, and the difference between the active site structures of 1,3-1,4-alpha-L-fucosidase (EC 3.2.1.111) and alpha-L-fucosidase (EC 3.2.1.51) in glycoside hydrolase family 29. The glycosynthase developed in this study should serve as a potentially powerful tool to specifically introduce the Le(a/x) epitopes onto labile glycoconjugates including glycoproteins. Mining glycosidases with strict specificity may represent the most efficient route to the specific synthesis of glycosidic bonds.
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===Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis complexed with deoxyfuconojirimycin===
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1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains.,Sakurama H, Fushinobu S, Hidaka M, Yoshida E, Honda Y, Ashida H, Kitaoka M, Kumagai H, Yamamoto K, Katayama T J Biol Chem. 2012 May 11;287(20):16709-19. Epub 2012 Mar 26. PMID:22451675<ref>PMID:22451675</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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[[3ues]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_longum_subsp._infantis Bifidobacterium longum subsp. infantis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UES OCA].
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<div class="pdbe-citations 3ues" style="background-color:#fffaf0;"></div>
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[[Category: 1,3-alpha-L-fucosidase]]
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== References ==
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[[Category: Bifidobacterium longum subsp. infantis]]
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<references/>
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[[Category: Ashida, H.]]
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__TOC__
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[[Category: Fushinobu, S.]]
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</StructureSection>
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[[Category: Hidaka, M.]]
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[[Category: Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]]
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[[Category: Honda, Y.]]
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[[Category: Large Structures]]
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[[Category: Katayama, T.]]
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[[Category: Ashida H]]
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[[Category: Kitaoka, M.]]
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[[Category: Fushinobu S]]
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[[Category: Kumagai, H.]]
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[[Category: Hidaka M]]
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[[Category: Sakurama, H.]]
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[[Category: Honda Y]]
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[[Category: Yamamoto, K.]]
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[[Category: Katayama T]]
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[[Category: Yoshida, E.]]
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[[Category: Kitaoka M]]
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[[Category: Hydrolase-hydrolase inhibitor complex]]
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[[Category: Kumagai H]]
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[[Category: Tim barrel]]
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[[Category: Sakurama H]]
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[[Category: Yamamoto K]]
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[[Category: Yoshida E]]

Current revision

Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis complexed with deoxyfuconojirimycin

PDB ID 3ues

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