1j99

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:37, 16 August 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1j99.jpg|left|200px]]<br /><applet load="1j99" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1j99, resolution 1.99&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF HUMAN DEHYDROEPIANDROSTERONE SULFOTRANSFERASE IN COMPLEX WITH SUBSTRATE'''<br />
 
-
==Overview==
+
==CRYSTAL STRUCTURE OF HUMAN DEHYDROEPIANDROSTERONE SULFOTRANSFERASE IN COMPLEX WITH SUBSTRATE==
-
Dehydroepiandrosterone sulphotransferase (DHEA-ST) is an enzyme that, converts dehydroepiandrosterone (DHEA), and some other steroids, into, their sulphonated forms. The enzyme catalyses the sulphonation of DHEA on, the 3alpha-oxygen, with 3'-phosphoadenosine-5'-phosphosulphate, contributing the sulphate. The structure of human DHEA-ST in complex with, its preferred substrate DHEA has been solved here to 1.99 A using, molecular replacement with oestradiol sulphotransferase (37% sequence, identity) as a model. Two alternative substrate-binding orientations have, been identified. The primary, catalytic, orientation has the DHEA, 3alpha-oxygen and the highly conserved catalytic histidine in nearly, identical positions as are seen for the related oestradiol, sulphotransferase. The substrate, however, shows rotations of up to 30, degrees, and there is a corresponding rearrangement of the protein loops, contributing to the active site. This may also reflect the low identity, between the two enzymes. The second orientation penetrates further into, the active site and can form a potential hydrogen bond with the, desulphonated cofactor 3',5'-phosphoadenosine (PAP). This second site, contains more van der Waal interactions with hydrophobic residues than the, catalytic site and may also reflect the substrate-inhibition site. The PAP, position was obtained from the previously solved structure of DHEA-ST, co-crystallized with PAP. This latter structure, due to the arrangement of, loops within the active site and monomer interactions, cannot bind, substrate. The results presented here describe details of substrate, binding to DHEA-ST and the potential relationship to substrate inhibition.
+
<StructureSection load='1j99' size='340' side='right'caption='[[1j99]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1j99]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J99 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J99 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AND:3-BETA-HYDROXY-5-ANDROSTEN-17-ONE'>AND</scene>, <scene name='pdbligand=HGI:MERCURY+(II)+IODIDE'>HGI</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j99 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j99 OCA], [https://pdbe.org/1j99 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j99 RCSB], [https://www.ebi.ac.uk/pdbsum/1j99 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j99 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ST2A1_HUMAN ST2A1_HUMAN] Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfonation of steroids and bile acids in the liver and adrenal glands.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/1j99_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j99 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Dehydroepiandrosterone sulphotransferase (DHEA-ST) is an enzyme that converts dehydroepiandrosterone (DHEA), and some other steroids, into their sulphonated forms. The enzyme catalyses the sulphonation of DHEA on the 3alpha-oxygen, with 3'-phosphoadenosine-5'-phosphosulphate contributing the sulphate. The structure of human DHEA-ST in complex with its preferred substrate DHEA has been solved here to 1.99 A using molecular replacement with oestradiol sulphotransferase (37% sequence identity) as a model. Two alternative substrate-binding orientations have been identified. The primary, catalytic, orientation has the DHEA 3alpha-oxygen and the highly conserved catalytic histidine in nearly identical positions as are seen for the related oestradiol sulphotransferase. The substrate, however, shows rotations of up to 30 degrees, and there is a corresponding rearrangement of the protein loops contributing to the active site. This may also reflect the low identity between the two enzymes. The second orientation penetrates further into the active site and can form a potential hydrogen bond with the desulphonated cofactor 3',5'-phosphoadenosine (PAP). This second site contains more van der Waal interactions with hydrophobic residues than the catalytic site and may also reflect the substrate-inhibition site. The PAP position was obtained from the previously solved structure of DHEA-ST co-crystallized with PAP. This latter structure, due to the arrangement of loops within the active site and monomer interactions, cannot bind substrate. The results presented here describe details of substrate binding to DHEA-ST and the potential relationship to substrate inhibition.
-
==Disease==
+
Crystal structure of human dehydroepiandrosterone sulphotransferase in complex with substrate.,Rehse PH, Zhou M, Lin SX Biochem J. 2002 May 15;364(Pt 1):165-71. PMID:11988089<ref>PMID:11988089</ref>
-
Known diseases associated with this structure: Histidinemia OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=609457 609457]], Selective T-cell defect OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176947 176947]]
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
1J99 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=IOD:'>IOD</scene>, <scene name='pdbligand=HGI:'>HGI</scene> and <scene name='pdbligand=AND:'>AND</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Alcohol_sulfotransferase Alcohol sulfotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.2.2 2.8.2.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J99 OCA].
+
</div>
 +
<div class="pdbe-citations 1j99" style="background-color:#fffaf0;"></div>
-
==Reference==
+
==See Also==
-
Crystal structure of human dehydroepiandrosterone sulphotransferase in complex with substrate., Rehse PH, Zhou M, Lin SX, Biochem J. 2002 May 15;364(Pt 1):165-71. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11988089 11988089]
+
*[[Sulfotransferase 3D structures|Sulfotransferase 3D structures]]
-
[[Category: Alcohol sulfotransferase]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Lin, S.X.]]
+
[[Category: Lin S-X]]
-
[[Category: Rehse, P.H.]]
+
[[Category: Rehse PH]]
-
[[Category: Zhou, M.]]
+
[[Category: Zhou M]]
-
[[Category: AND]]
+
-
[[Category: HGI]]
+
-
[[Category: IOD]]
+
-
[[Category: dehydroepiandosterone]]
+
-
[[Category: dhea]]
+
-
[[Category: sulfotransferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:06:22 2008''
+

Current revision

CRYSTAL STRUCTURE OF HUMAN DEHYDROEPIANDROSTERONE SULFOTRANSFERASE IN COMPLEX WITH SUBSTRATE

PDB ID 1j99

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools