1jen

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[[Image:1jen.jpg|left|200px]]<br /><applet load="1jen" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1jen, resolution 2.250&Aring;" />
 
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'''HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE'''<br />
 
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==Overview==
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==HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE==
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BACKGROUND: S-Adenosylmethionine decarboxylase (AdoMetDC) is a critical, regulatory enzyme of the polyamine synthetic pathway, and a well-studied, drug target. The AdoMetDC decarboxylation reaction depends upon a pyruvoyl, cofactor generated via an intramolecular proenzyme self-cleavage reaction., Both the proenzyme-processing and substrate-decarboxylation reactions are, allosterically enhanced by putrescine. Structural elucidation of this, enzyme is necessary to fully interpret the existing mutational and, inhibitor-binding data, and to suggest further experimental studies., RESULTS: The structure of human AdoMetDC has been determined to 2.25 A, resolution using multiwavelength anomalous diffraction (MAD) phasing, methods based on 22 selenium-atom positions. The quaternary structure of, the mature AdoMetDC is an (alpha beta)2 dimer, where alpha and beta, represent the products of the proenzyme self-cleavage reaction. The, architecture of each (alpha beta) monomer is a novel four-layer, alpha/beta-sandwich fold, comprised of two antiparallel eight-stranded, beta sheets flanked by several alpha and 3(10) helices. CONCLUSIONS: The, structure and topology of AdoMetDC display internal symmetry, suggesting, that this protein may be the product of an ancient gene duplication. The, positions of conserved, functionally important residues suggest the, location of the active site and a possible binding site for the effector, molecule putrescine.
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<StructureSection load='1jen' size='340' side='right'caption='[[1jen]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1jen]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JEN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JEN FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jen FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jen OCA], [https://pdbe.org/1jen PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jen RCSB], [https://www.ebi.ac.uk/pdbsum/1jen PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jen ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DCAM_HUMAN DCAM_HUMAN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/je/1jen_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jen ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: S-Adenosylmethionine decarboxylase (AdoMetDC) is a critical regulatory enzyme of the polyamine synthetic pathway, and a well-studied drug target. The AdoMetDC decarboxylation reaction depends upon a pyruvoyl cofactor generated via an intramolecular proenzyme self-cleavage reaction. Both the proenzyme-processing and substrate-decarboxylation reactions are allosterically enhanced by putrescine. Structural elucidation of this enzyme is necessary to fully interpret the existing mutational and inhibitor-binding data, and to suggest further experimental studies. RESULTS: The structure of human AdoMetDC has been determined to 2.25 A resolution using multiwavelength anomalous diffraction (MAD) phasing methods based on 22 selenium-atom positions. The quaternary structure of the mature AdoMetDC is an (alpha beta)2 dimer, where alpha and beta represent the products of the proenzyme self-cleavage reaction. The architecture of each (alpha beta) monomer is a novel four-layer alpha/beta-sandwich fold, comprised of two antiparallel eight-stranded beta sheets flanked by several alpha and 3(10) helices. CONCLUSIONS: The structure and topology of AdoMetDC display internal symmetry, suggesting that this protein may be the product of an ancient gene duplication. The positions of conserved, functionally important residues suggest the location of the active site and a possible binding site for the effector molecule putrescine.
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==Disease==
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The crystal structure of human S-adenosylmethionine decarboxylase at 2.25 A resolution reveals a novel fold.,Ekstrom JL, Mathews II, Stanley BA, Pegg AE, Ealick SE Structure. 1999 May;7(5):583-95. PMID:10378277<ref>PMID:10378277</ref>
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Known disease associated with this structure: Acromesomelic dysplasia, Maroteaux type OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=108961 108961]]
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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1JEN is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Active as [http://en.wikipedia.org/wiki/Adenosylmethionine_decarboxylase Adenosylmethionine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.50 4.1.1.50] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JEN OCA].
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</div>
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<div class="pdbe-citations 1jen" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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The crystal structure of human S-adenosylmethionine decarboxylase at 2.25 A resolution reveals a novel fold., Ekstrom JL, Mathews II, Stanley BA, Pegg AE, Ealick SE, Structure. 1999 May;7(5):583-95. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10378277 10378277]
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*[[SAM decarboxylase|SAM decarboxylase]]
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[[Category: Adenosylmethionine decarboxylase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Protein complex]]
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[[Category: Large Structures]]
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[[Category: Ealick, S.E.]]
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[[Category: Ealick SE]]
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[[Category: Ekstrom, J.L.]]
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[[Category: Ekstrom JL]]
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[[Category: Mathews, I.I.]]
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[[Category: Mathews II]]
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[[Category: Pegg, A.E.]]
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[[Category: Pegg AE]]
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[[Category: Stanley, B.A.]]
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[[Category: Stanley BA]]
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[[Category: allosteric enzyme]]
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[[Category: gene duplication]]
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[[Category: polyamine biosynthesis]]
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[[Category: pyruvoyl]]
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[[Category: s-adenosylmethionine decarboxylase]]
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[[Category: sandwich]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:07:04 2008''
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Current revision

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE

PDB ID 1jen

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