3p50

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[[Image:3p50.png|left|200px]]
 
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==Structure of propofol bound to a pentameric ligand-gated ion channel, GLIC==
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<StructureSection load='3p50' size='340' side='right'caption='[[3p50]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3p50]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloeobacter_violaceus Gloeobacter violaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P50 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P50 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PFL:2,6-BIS(1-METHYLETHYL)PHENOL'>PFL</scene>, <scene name='pdbligand=PLC:DIUNDECYL+PHOSPHATIDYL+CHOLINE'>PLC</scene></td></tr>
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{{STRUCTURE_3p50| PDB=3p50 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p50 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p50 OCA], [https://pdbe.org/3p50 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p50 RCSB], [https://www.ebi.ac.uk/pdbsum/3p50 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p50 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GLIC_GLOVI GLIC_GLOVI] Cationic channel with similar permeabilities for Na(+) and K(+), that is activated by an increase of the proton concentration on the extracellular side. Displays no permeability for chloride ions. Shows slow kinetics of activation, no desensitization and a single channel conductance of 8 pS. Might contribute to adaptation to external pH change.<ref>PMID:17167423</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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General anaesthetics have enjoyed long and widespread use but their molecular mechanism of action remains poorly understood. There is good evidence that their principal targets are pentameric ligand-gated ion channels (pLGICs) such as inhibitory GABA(A) (gamma-aminobutyric acid) receptors and excitatory nicotinic acetylcholine receptors, which are respectively potentiated and inhibited by general anaesthetics. The bacterial homologue from Gloeobacter violaceus (GLIC), whose X-ray structure was recently solved, is also sensitive to clinical concentrations of general anaesthetics. Here we describe the crystal structures of the complexes propofol/GLIC and desflurane/GLIC. These reveal a common general-anaesthetic binding site, which pre-exists in the apo-structure in the upper part of the transmembrane domain of each protomer. Both molecules establish van der Waals interactions with the protein; propofol binds at the entrance of the cavity whereas the smaller, more flexible, desflurane binds deeper inside. Mutations of some amino acids lining the binding site profoundly alter the ionic response of GLIC to protons, and affect its general-anaesthetic pharmacology. Molecular dynamics simulations, performed on the wild type (WT) and two GLIC mutants, highlight differences in mobility of propofol in its binding site and help to explain these effects. These data provide a novel structural framework for the design of general anaesthetics and of allosteric modulators of brain pLGICs.
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===Structure of propofol bound to a pentameric ligand-gated ion channel, GLIC===
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X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel.,Nury H, Van Renterghem C, Weng Y, Tran A, Baaden M, Dufresne V, Changeux JP, Sonner JM, Delarue M, Corringer PJ Nature. 2011 Jan 20;469(7330):428-31. PMID:21248852<ref>PMID:21248852</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 3p50" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21248852 is the PubMed ID number.
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{{ABSTRACT_PUBMED_21248852}}
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==About this Structure==
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[[3p50]] is a 5 chain structure of [[Ion channels]] with sequence from [http://en.wikipedia.org/wiki/Gloeobacter_violaceus Gloeobacter violaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P50 OCA].
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==See Also==
==See Also==
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*[[Ion channels|Ion channels]]
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*[[Ion channels 3D structures|Ion channels 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:021248852</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Gloeobacter violaceus]]
[[Category: Gloeobacter violaceus]]
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[[Category: Baaden, M.]]
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[[Category: Large Structures]]
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[[Category: Changeux, J P.]]
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[[Category: Baaden M]]
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[[Category: Corringer, P J.]]
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[[Category: Changeux JP]]
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[[Category: Delarue, M.]]
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[[Category: Corringer PJ]]
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[[Category: Dufresne, V.]]
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[[Category: Delarue M]]
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[[Category: Nury, H.]]
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[[Category: Dufresne V]]
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[[Category: Renterghem, C Van.]]
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[[Category: Nury H]]
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[[Category: Sonner, J M.]]
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[[Category: Sonner JM]]
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[[Category: Tran, A.]]
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[[Category: Tran A]]
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[[Category: Weng, Y.]]
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[[Category: Van Renterghem C]]
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[[Category: Ligand-gated ion channel]]
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[[Category: Weng Y]]
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[[Category: Membrane protein]]
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[[Category: Transport protein]]
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Current revision

Structure of propofol bound to a pentameric ligand-gated ion channel, GLIC

PDB ID 3p50

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