This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3vd3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:24, 14 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3vd3.jpg|left|200px]]
 
-
<!--
+
==E. coli (lacZ) beta-galactosidase (N460D)==
-
The line below this paragraph, containing "STRUCTURE_3vd3", creates the "Structure Box" on the page.
+
<StructureSection load='3vd3' size='340' side='right'caption='[[3vd3]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3vd3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VD3 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_3vd3| PDB=3vd3 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vd3 OCA], [https://pdbe.org/3vd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vd3 RCSB], [https://www.ebi.ac.uk/pdbsum/3vd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vd3 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BGAL_ECOLI BGAL_ECOLI]
-
===E. coli (lacZ) beta-galactosidase (N460D)===
+
==See Also==
-
 
+
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22446164}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 22446164 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_22446164}}
+
-
 
+
-
==About this Structure==
+
-
[[3vd3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VD3 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022446164</ref><references group="xtra"/>
+
-
[[Category: Beta-galactosidase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Dugdale, M L.]]
+
[[Category: Large Structures]]
-
[[Category: Dutkoski, M J.]]
+
[[Category: Dugdale ML]]
-
[[Category: Fraser, M E.]]
+
[[Category: Dutkoski MJ]]
-
[[Category: Hahn, J N.]]
+
[[Category: Fraser ME]]
-
[[Category: Huber, R E.]]
+
[[Category: Hahn JN]]
-
[[Category: Kappelhoff, J C.]]
+
[[Category: Huber RE]]
-
[[Category: Tamman, S D.]]
+
[[Category: Kappelhoff JC]]
-
[[Category: Wheatley, R W.]]
+
[[Category: Tamman SD]]
-
[[Category: 2-stage binding]]
+
[[Category: Wheatley RW]]
-
[[Category: Beta supersandwich]]
+
-
[[Category: Glycosidase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Immunoglobulin]]
+
-
[[Category: Jelly-roll barrel]]
+
-
[[Category: Substrate binding]]
+
-
[[Category: Transition state stabilization]]
+

Current revision

E. coli (lacZ) beta-galactosidase (N460D)

PDB ID 3vd3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools