1l8j

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[[Image:1l8j.gif|left|200px]]<br /><applet load="1l8j" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1l8j, resolution 2.0&Aring;" />
 
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'''Crystal Structure of the Endothelial Protein C Receptor and Bound Phospholipid Molecule'''<br />
 
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==Overview==
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==Crystal Structure of the Endothelial Protein C Receptor and Bound Phospholipid Molecule==
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The endothelial cell protein C receptor (EPCR) shares approximately 20%, sequence identity with the major histocompatibility complex class 1/CD1, family of molecules, accelerates the thrombin-thrombomodulin-dependent, generation of activated protein C, a natural anticoagulant, binds to, activated neutrophils, and can undergo translocation from the plasma, membrane to the nucleus. Blocking protein C/activated protein C binding to, the receptor inhibits not only protein C activation but the ability of the, host to respond appropriately to bacterial challenge, exacerbating both, the coagulant and inflammatory responses. To understand how EPCR, accomplishes these multiple tasks, we solved the crystal structure of EPCR, alone and in complex with the phospholipid binding domain of protein C., The structures were strikingly similar to CD1d. A tightly bound, phospholipid resides in the groove typically involved in antigen, presentation. The protein C binding site is outside this conserved groove, and is distal from the membrane-spanning domain. Extraction of the lipid, resulted in loss of protein C binding, which could be restored by lipid, reconstitution. CD1d augments the immune response by presenting glycolipid, antigens. The EPCR structure is a model for how CD1d binds lipids and, further suggests additional potential functions for EPCR in immune, regulation, possibly including the anti-phospholipid syndrome.
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<StructureSection load='1l8j' size='340' side='right'caption='[[1l8j]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1l8j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L8J FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=PTY:PHOSPHATIDYLETHANOLAMINE'>PTY</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l8j OCA], [https://pdbe.org/1l8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l8j RCSB], [https://www.ebi.ac.uk/pdbsum/1l8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l8j ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/EPCR_HUMAN EPCR_HUMAN] Binds activated protein C. Enhances protein C activation by the thrombin-thrombomodulin complex; plays a role in the protein C pathway controlling blood coagulation.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l8/1l8j_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l8j ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The endothelial cell protein C receptor (EPCR) shares approximately 20% sequence identity with the major histocompatibility complex class 1/CD1 family of molecules, accelerates the thrombin-thrombomodulin-dependent generation of activated protein C, a natural anticoagulant, binds to activated neutrophils, and can undergo translocation from the plasma membrane to the nucleus. Blocking protein C/activated protein C binding to the receptor inhibits not only protein C activation but the ability of the host to respond appropriately to bacterial challenge, exacerbating both the coagulant and inflammatory responses. To understand how EPCR accomplishes these multiple tasks, we solved the crystal structure of EPCR alone and in complex with the phospholipid binding domain of protein C. The structures were strikingly similar to CD1d. A tightly bound phospholipid resides in the groove typically involved in antigen presentation. The protein C binding site is outside this conserved groove and is distal from the membrane-spanning domain. Extraction of the lipid resulted in loss of protein C binding, which could be restored by lipid reconstitution. CD1d augments the immune response by presenting glycolipid antigens. The EPCR structure is a model for how CD1d binds lipids and further suggests additional potential functions for EPCR in immune regulation, possibly including the anti-phospholipid syndrome.
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==About this Structure==
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The crystal structure of the endothelial protein C receptor and a bound phospholipid.,Oganesyan V, Oganesyan N, Terzyan S, Qu D, Dauter Z, Esmon NL, Esmon CT J Biol Chem. 2002 Jul 12;277(28):24851-4. Epub 2002 May 28. PMID:12034704<ref>PMID:12034704</ref>
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1L8J is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=PTY:'>PTY</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L8J OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The crystal structure of the endothelial protein C receptor and a bound phospholipid., Oganesyan V, Oganesyan N, Terzyan S, Qu D, Dauter Z, Esmon NL, Esmon CT, J Biol Chem. 2002 Jul 12;277(28):24851-4. Epub 2002 May 28. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12034704 12034704]
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</div>
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<div class="pdbe-citations 1l8j" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Dauter, Z.]]
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[[Category: Dauter Z]]
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[[Category: Dongfeng, Q.]]
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[[Category: Dongfeng Q]]
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[[Category: Esmon, C.T.]]
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[[Category: Esmon CT]]
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[[Category: Esmon, N.L.]]
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[[Category: Esmon NL]]
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[[Category: Oganesyan, N.]]
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[[Category: Oganesyan N]]
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[[Category: Oganesyan, V.]]
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[[Category: Oganesyan V]]
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[[Category: Terzyan, S.]]
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[[Category: Terzyan S]]
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[[Category: PTY]]
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[[Category: glycosilation]]
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[[Category: hydrophobic groove]]
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[[Category: mhc class1]]
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[[Category: protein-lipid complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:16:55 2008''
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Current revision

Crystal Structure of the Endothelial Protein C Receptor and Bound Phospholipid Molecule

PDB ID 1l8j

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