3dzb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:46, 17 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3dzb.png|left|200px]]
 
-
<!--
+
==Crystal structure of Prephenate dehydrogenase from Streptococcus thermophilus==
-
The line below this paragraph, containing "STRUCTURE_3dzb", creates the "Structure Box" on the page.
+
<StructureSection load='3dzb' size='340' side='right'caption='[[3dzb]], [[Resolution|resolution]] 2.46&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.46&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3dzb| PDB=3dzb | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzb OCA], [https://pdbe.org/3dzb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzb RCSB], [https://www.ebi.ac.uk/pdbsum/3dzb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzb ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dzb TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of Prephenate dehydrogenase from Streptococcus thermophilus===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
[[3dzb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZB OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzb_consurf.spt"</scriptWhenChecked>
-
[[Category: Prephenate dehydrogenase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Streptococcus thermophilus lmg 18311]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Burley, S K.]]
+
</jmolCheckbox>
-
[[Category: Eswaramoorthy, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dzb ConSurf].
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Swaminathan, S.]]
+
__TOC__
-
[[Category: Zhang, Z.]]
+
</StructureSection>
-
[[Category: 11134a2]]
+
[[Category: Large Structures]]
-
[[Category: Biosynthetic protein]]
+
[[Category: Burley SK]]
-
[[Category: Domain swap]]
+
[[Category: Eswaramoorthy S]]
-
[[Category: Ec:1 3.12.-]]
+
[[Category: Swaminathan S]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Zhang Z]]
-
[[Category: Nysgxrc]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Tyrosine biosynthesis]]
+

Current revision

Crystal structure of Prephenate dehydrogenase from Streptococcus thermophilus

PDB ID 3dzb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools