3a11

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[[Image:3a11.png|left|200px]]
 
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==Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1==
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The line below this paragraph, containing "STRUCTURE_3a11", creates the "Structure Box" on the page.
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<StructureSection load='3a11' size='340' side='right'caption='[[3a11]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3a11]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A11 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A11 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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{{STRUCTURE_3a11| PDB=3a11 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a11 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a11 OCA], [https://pdbe.org/3a11 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a11 RCSB], [https://www.ebi.ac.uk/pdbsum/3a11 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a11 ProSAT]</span></td></tr>
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</table>
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===Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1===
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== Function ==
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[https://www.uniprot.org/uniprot/R15PI_THEKO R15PI_THEKO] Catalyzes the isomerization of ribose 1,5-bisphosphate (R15P) to ribulose 1,5-bisphosphate (RuBP), the CO(2) acceptor and substrate for RubisCO. Only accepts the alpha-anomer of D-ribose 1,5-bisphosphate as substrate, being inactive on the beta-anomer. Displays a strict substrate specificity, since other phosphorylated sugars such as R5P, ribose, G16P, G6P, G1P, FBP, F6P, and PRPP, are not substrates. Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and RubisCO.<ref>PMID:17303759</ref> <ref>PMID:22511789</ref> <ref>PMID:23065974</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 22511789 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a1/3a11_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_22511789}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[3a11]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A11 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a11 ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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<ref group="xtra">PMID:022511789</ref><references group="xtra"/>
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<references/>
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[[Category: Thermococcus kodakarensis]]
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__TOC__
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[[Category: Atomi, H.]]
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</StructureSection>
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[[Category: Fujihashi, M.]]
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[[Category: Large Structures]]
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[[Category: Imanaka, T.]]
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[[Category: Thermococcus kodakarensis KOD1]]
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[[Category: Miki, K.]]
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[[Category: Atomi H]]
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[[Category: Nakamura, A.]]
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[[Category: Fujihashi M]]
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[[Category: Nishiba, Y.]]
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[[Category: Imanaka T]]
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[[Category: Yano, A.]]
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[[Category: Miki K]]
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[[Category: Yoshida, S.]]
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[[Category: Nakamura A]]
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[[Category: Hexamer]]
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[[Category: Nishiba Y]]
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[[Category: Initiation factor]]
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[[Category: Yano A]]
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[[Category: Isomerase]]
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[[Category: Yoshida S]]
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[[Category: Rossmann fold]]
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Current revision

Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1

PDB ID 3a11

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