This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3v9j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:21, 14 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3v9j.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with sulfate ion==
-
The line below this paragraph, containing "STRUCTURE_3v9j", creates the "Structure Box" on the page.
+
<StructureSection load='3v9j' size='340' side='right'caption='[[3v9j]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3v9j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V9J FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.299&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3v9j| PDB=3v9j | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9j OCA], [https://pdbe.org/3v9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v9j RCSB], [https://www.ebi.ac.uk/pdbsum/3v9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9j ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AL4A1_MOUSE AL4A1_MOUSE] Irreversible conversion of delta-1-pyrroline-5-carboxylate (P5C), derived either from proline or ornithine, to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes (By similarity).
-
===Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with sulfate ion===
+
==See Also==
-
 
+
*[[Aldehyde dehydrogenase 3D structures|Aldehyde dehydrogenase 3D structures]]
-
 
+
*[[Pyrroline-5-carboxylate dehydrogenase|Pyrroline-5-carboxylate dehydrogenase]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_22516612}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 22516612 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
-
{{ABSTRACT_PUBMED_22516612}}
+
-
 
+
-
==About this Structure==
+
-
[[3v9j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9J OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022516612</ref><references group="xtra"/>
+
-
[[Category: 1-pyrroline-5-carboxylate dehydrogenase]]
+
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Srivastava, D.]]
+
[[Category: Srivastava D]]
-
[[Category: Tanner, J J.]]
+
[[Category: Tanner JJ]]
-
[[Category: Acting on aldehyde or oxo group of donor]]
+
-
[[Category: Aldehyde dehydrogenase]]
+
-
[[Category: Mitochondria]]
+
-
[[Category: Nad or nadp as acceptor]]
+
-
[[Category: Nucleotide binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rossmann fold]]
+

Current revision

Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with sulfate ion

PDB ID 3v9j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools