This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4dx7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:59, 1 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4dx7.jpg|left|200px]]
 
-
<!--
+
==Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop==
-
The line below this paragraph, containing "STRUCTURE_4dx7", creates the "Structure Box" on the page.
+
<StructureSection load='4dx7' size='340' side='right'caption='[[4dx7]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4dx7]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DX7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DX7 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.253&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DM2:DOXORUBICIN'>DM2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEX:HEXANE'>HEX</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=LMU:DODECYL-ALPHA-D-MALTOSIDE'>LMU</scene></td></tr>
-
{{STRUCTURE_4dx7| PDB=4dx7 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dx7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dx7 OCA], [https://pdbe.org/4dx7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dx7 RCSB], [https://www.ebi.ac.uk/pdbsum/4dx7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dx7 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/ACRB_ECOLI ACRB_ECOLI] AcrAB is a drug efflux protein with a broad substrate specificity.<ref>PMID:16915237</ref> <ref>PMID:16946072</ref> <ref>PMID:17194213</ref>
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22451937}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 22451937 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Escherichia coli K-12]]
-
{{ABSTRACT_PUBMED_22451937}}
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
[[4dx7]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DX7 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022451937</ref><references group="xtra"/>
+
-
[[Category: Escherichia coli]]
+
[[Category: Synthetic construct]]
[[Category: Synthetic construct]]
-
[[Category: Bohnert, J A.]]
+
[[Category: Bohnert JA]]
-
[[Category: Brandstaetter, L.]]
+
[[Category: Brandstaetter L]]
-
[[Category: Cha, H.]]
+
[[Category: Cha H]]
-
[[Category: Diederichs, K.]]
+
[[Category: Diederichs K]]
-
[[Category: Eicher, T.]]
+
[[Category: Eicher T]]
-
[[Category: El-Delik, J.]]
+
[[Category: El-Delik J]]
-
[[Category: Gruetter, M G.]]
+
[[Category: Gruetter MG]]
-
[[Category: Kern, W V.]]
+
[[Category: Kern WV]]
-
[[Category: Pos, K M.]]
+
[[Category: Pos KM]]
-
[[Category: Seeger, M A.]]
+
[[Category: Seeger MA]]
-
[[Category: Verrey, F.]]
+
[[Category: Verrey F]]
-
[[Category: Darpin]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Multidrug efflux protein]]
+
-
[[Category: Transport protein]]
+

Current revision

Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop

PDB ID 4dx7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools