Sandbox Reserved 474

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (03:05, 3 May 2012) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 4: Line 4:
-
== C-Reactive Protein ==
+
== Human C-Reactive Protein ==
-
<StructureSection load='1b09' size='500' side='right' caption='Structure of Human C-Reactive Protein (PDB entry [[1b09]])' scene=''>'''C-Reactive Protein''' (CRP) is considered to be a normal plasma protein such that its concentration rises as a cytokine-mediated response resulting from tissue injury, infection or inflammation [1]. CRPs' structure is shown off to the right (PDB entry 1b09) and it does not have a specified active site. It's unique structure puts it in the pentraxin family which includes serum amyloid P component (SAP) and it consists of five identical, non-covalently associated protomers that are arranged in a symmetrical fashion weighing ~ 23kDa [1]. Since it's structure is highly conserved, the calcium dependent binding site allows found within CRP allows for strong binding to phosphocholine (PC) along with other structures and this makes it physiologically relevant. Some recent studies have made a prognostic comparison with increased CRP levels and coronary heart disease, thus reinforcing the idea that CRP also plays a significant role as a future therapeutic target [1].
+
<StructureSection load='1b09' size='500' side='right' caption='Structure of Human C-Reactive Protein (PDB entry [[1b09]])' scene=''>'''Human C-Reactive Protein''' (CRP) is considered to be a normal plasma protein such that its concentration rises as a cytokine-mediated response resulting from tissue injury, infection or inflammation [1]. CRP was first discovered from ''Streptococcus pneumoniae'' and it's structure is shown off to the right (PDB entry 1b09) and it does not have a specified active site. It's unique structure puts it in the pentraxin family which includes serum amyloid P component (SAP) and it consists of five identical, non-covalently associated protomers that are arranged in a symmetrical fashion weighing ~ 23kDa [1]. Since it's structure is highly conserved, the calcium dependent binding site allows found within CRP allows for strong binding to phosphocholine (PC) along with other structures and this makes it physiologically relevant. Some recent studies have made a prognostic comparison with increased CRP levels and coronary heart disease, thus reinforcing the idea that CRP also plays a significant role as a future therapeutic target [1].
== Structure and Function ==
== Structure and Function ==
CRPs five promoter structures are folded into two anti-parallel <scene name='Sandbox_Reserved_474/Beta-sheet/1'>β-Sheets</scene> with flattened jellyroll topologies [2]. Each promoter contains a recognition face with a <scene name='Sandbox_Reserved_474/Phosphocholine/1'>phosphocholine</scene> binding site consisting of two coordinated <scene name='Sandbox_Reserved_474/Calcium_ion/1'>calcium </scene> ions adjacent to a hydrophobic pocket.
CRPs five promoter structures are folded into two anti-parallel <scene name='Sandbox_Reserved_474/Beta-sheet/1'>β-Sheets</scene> with flattened jellyroll topologies [2]. Each promoter contains a recognition face with a <scene name='Sandbox_Reserved_474/Phosphocholine/1'>phosphocholine</scene> binding site consisting of two coordinated <scene name='Sandbox_Reserved_474/Calcium_ion/1'>calcium </scene> ions adjacent to a hydrophobic pocket.
-
The co-crystallized structure of CRP with phosphocholine suggest that <scene name='Sandbox_Reserved_474/Phe-66/2'>Phe-66</scene> and <scene name='Sandbox_Reserved_474/Glu-81/1'>Glu-81</scene> are two very crucial residues that mediate binding between phosphocholine and CRP[2]. More specifically, Phe-66 provides specific hydrophobic interactions with the methyl groups of PC. Similarly, Glu-81 is located on the opposite end of the pocket where it interacts well with the positively charged choline nitrogen. Present on the opposite face of the pentamer is the effector face, where the presumed <scene name='Sandbox_Reserved_474/C1q/1'>C1q</scene> and Fcγ receptors bind, and at this cleft are several residues present (<scene name='Sandbox_Reserved_474/Asp-112/1'>Asp-112</scene> and Tyr-175) which are both necessary to bind CRP to C1q [2].
+
The co-crystallized structure of CRP with phosphocholine suggest that <scene name='Sandbox_Reserved_474/Phe-66/2'>Phe-66</scene> and <scene name='Sandbox_Reserved_474/Glu-81/1'>Glu-81</scene> are two very crucial residues that mediate binding between phosphocholine and CRP[2]. More specifically, Phe-66 provides specific hydrophobic interactions with the methyl groups of PC. Similarly, Glu-81 is located on the opposite end of the pocket where it interacts well with the positively charged choline nitrogen. Present on the opposite face of the pentamer is the effector face, where the presumed <scene name='Sandbox_Reserved_474/C1q/1'>C1q</scene> and Fcγ receptors bind, and at this cleft several residues are present (<scene name='Sandbox_Reserved_474/Asp-112/1'>Asp-112</scene> and Tyr-175) which are both necessary to bind CRP to C1q [2].
== Mechanism ==
== Mechanism ==
Currently Unknown
Currently Unknown
 +
 +
== Methods Used ==
 +
Some of the methods used to determine the structure included: Crystallization, Data Collection and Processing, Obtaining the phases with molecular replacement and Model Building and refinement [3].
== Regulation of CRP expression ==
== Regulation of CRP expression ==
Line 31: Line 34:
One other biological effect/function of CRP includes CRP's unique ability to identify pathogens to server as the hosts' first line of defense.
One other biological effect/function of CRP includes CRP's unique ability to identify pathogens to server as the hosts' first line of defense.
 +
== Mediator of Atherosclerosis ==
 +
It has been shown that at known concentrations, CRP elicits effects which result in either proinflammatory or proatherosclerotic phenotype [4]. Several in vitro experiments have shown CRP to downregulate eNOS transcription, thus destabilizing its mRNA, resulting in in a decreased release of basel and stimulated NO, key endothelial factors [4]. By inhibiting NO production, CRP effectively facilitates apoptosis and blocks angiogenesis. Furthermore, it has been proposed that it is responsible for promoting the upregulation of nuclear factor-κB, which is a key promotor of several proatherosclerotic genes [4]. In addition, recent evidence has shown that it also has proatherogenic effects within smooth vascular muscle as well [4].
== References ==
== References ==
Line 37: Line 42:
2. Steven Black, Irving Kushner, David Samols, C-reactive Protein*, Journal of Biological Chemistry, Volume 279,No. 47, Issue 19, 19 November 2004, Pages 48487-48490, DOI 10.1074/jbc.R400025200
2. Steven Black, Irving Kushner, David Samols, C-reactive Protein*, Journal of Biological Chemistry, Volume 279,No. 47, Issue 19, 19 November 2004, Pages 48487-48490, DOI 10.1074/jbc.R400025200
 +
 +
3. PDB of CRP
 +
 +
4. Subodh Verma, Paul E. Szmitko, Edward T.H. Yeh, C-reactive Protein: Structure Affects Function, Journal of the American Heart Association, Volume 109, 2004, Pages 1914-1917, ISSN: 1524-4539, DOI: 10.1161/01.CIR.0000127085.32999.64

Current revision

This Sandbox is Reserved from 13/03/2012, through 01/06/2012 for use in the course "Proteins and Molecular Mechanisms" taught by Robert B. Rose at the North Carolina State University, Raleigh, NC USA. This reservation includes Sandbox Reserved 451 through Sandbox Reserved 500.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

For more help, look at this link: http://www.proteopedia.org/wiki/index.php/Help:Getting_Started_in_Proteopedia


Human C-Reactive Protein

Structure of Human C-Reactive Protein (PDB entry 1b09)

Drag the structure with the mouse to rotate
Personal tools