1qcy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:15, 14 February 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1qcy.jpg|left|200px]]<br /><applet load="1qcy" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1qcy, resolution 2.30&Aring;" />
 
-
'''THE CRYSTAL STRUCTURE OF THE I-DOMAIN OF HUMAN INTEGRIN ALPHA1BETA1'''<br />
 
-
==Overview==
+
==THE CRYSTAL STRUCTURE OF THE I-DOMAIN OF HUMAN INTEGRIN ALPHA1BETA1==
-
Integrin alpha(1)beta(1) is one of four collagen-binding integrins in, humans. Collagens bind to the alphaI domain and in the case of alpha(2)I, collagen binding is competitively inhibited by peptides containing the, RKKH sequence and derived from the metalloproteinase jararhagin of snake, venom from Bothrops jararaca. In alpha(2)I, these peptides bind near the, metal ion-dependent adhesion site (MIDAS), where a collagen (I)-like, peptide is known to bind; magnesium is required for binding. Published, structures of the ligand-bound "open" conformation of alpha(2)I differs, significantly from the "closed" conformation seen in the structure of, apo-alpha(2)I near MIDAS. Here we show that two peptides, CTRKKHDC and, CARKKHDC, derived from jararhagin also bind to alpha(1)I and competitively, inhibit collagen I binding. Furthermore, calorimetric and fluorimetric, measurements show that the structure of the complex of alpha(1)I with, Mg(2+) and CTRKKHDC differs from structure in the absence of peptide. A, comparison of the x-ray structure of apo-alpha(1)I ("closed" conformation), and a model structure of the alpha(1)I ("open" conformation) based on the, closely related structure of alpha(2)I reveals that the binding site is, partially blocked to ligands by Glu(255) and Tyr(285) in the "closed", structure, whereas in the "open" structure helix C is unwound and these, residues are shifted, and the "RKKH" peptides fit well when docked. The, "open" conformation of alpha(2)I resulting from binding a collagen, (I)-like peptide leads to exposure of hydrophobic surface, also seen in, the model of alpha(1)I and shown experimentally for alpha(1)I using a, fluorescent hydrophobic probe.
+
<StructureSection load='1qcy' size='340' side='right'caption='[[1qcy]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1qcy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QCY FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qcy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qcy OCA], [https://pdbe.org/1qcy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qcy RCSB], [https://www.ebi.ac.uk/pdbsum/1qcy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qcy ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ITA1_HUMAN ITA1_HUMAN] Integrin alpha-1/beta-1 is a receptor for laminin and collagen. It recognizes the proline-hydroxylated sequence G-F-P-G-E-R in collagen.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qc/1qcy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qcy ConSurf].
 +
<div style="clear:both"></div>
-
==About this Structure==
+
==See Also==
-
1QCY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QCY OCA].
+
*[[Integrin 3D structures|Integrin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Jararhagin-derived RKKH peptides induce structural changes in alpha1I domain of human integrin alpha1beta1., Nymalm Y, Puranen JS, Nyholm TK, Kapyla J, Kidron H, Pentikainen OT, Airenne TT, Heino J, Slotte JP, Johnson MS, Salminen TA, J Biol Chem. 2004 Feb 27;279(9):7962-70. Epub 2003 Dec 4. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14660600 14660600]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Heino, J.]]
+
[[Category: Heino J]]
-
[[Category: Johnson, M.S.]]
+
[[Category: Johnson MS]]
-
[[Category: Kaepylae, J.]]
+
[[Category: Kaepylae J]]
-
[[Category: Kankare, J.A.]]
+
[[Category: Kankare JA]]
-
[[Category: Nymalm, Y.]]
+
[[Category: Nymalm Y]]
-
[[Category: Salminen, T.A.]]
+
[[Category: Salminen TA]]
-
[[Category: MG]]
+
-
[[Category: dinucleotide binding fold]]
+
-
[[Category: rossman fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:44:07 2008''
+

Current revision

THE CRYSTAL STRUCTURE OF THE I-DOMAIN OF HUMAN INTEGRIN ALPHA1BETA1

PDB ID 1qcy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1qcy"
Personal tools