1qm2

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[[Image:1qm2.jpg|left|200px]]<br /><applet load="1qm2" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1qm2" />
 
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'''HUMAN PRION PROTEIN FRAGMENT 121-230'''<br />
 
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==Overview==
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==Human prion protein fragment 121-230==
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The NMR structures of the recombinant human prion protein, hPrP(23-230), and two C-terminal fragments, hPrP(90-230) and hPrP(121-230), include a, globular domain extending from residues 125-228, for which a detailed, structure was obtained, and an N-terminal flexibly disordered "tail." The, globular domain contains three alpha-helices comprising the residues, 144-154, 173-194, and 200-228 and a short anti-parallel beta-sheet, comprising the residues 128-131 and 161-164. Within the globular domain, three polypeptide segments show increased structural disorder: i.e., a, loop of residues 167-171, the residues 187-194 at the end of helix 2, and, the residues 219-228 in the C-terminal part of helix 3. The local, conformational state of the polypeptide segments 187-193 in helix 2 and, 219-226 in helix 3 is measurably influenced by the length of the, N-terminal tail, with the helical states being most highly populated in, hPrP(23-230). When compared with the previously reported structures of the, murine and Syrian hamster prion proteins, the length of helix 3 coincides, more closely with that in the Syrian hamster protein whereas the, disordered loop 167-171 is shared with murine PrP. These species, variations of local structure are in a surface area of the cellular form, of PrP that has previously been implicated in intermolecular interactions, related both to the species barrier for infectious transmission of prion, disease and to immune reactions.
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<StructureSection load='1qm2' size='340' side='right'caption='[[1qm2]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1qm2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. The May 2008 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Prions'' by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2008_5 10.2210/rcsb_pdb/mom_2008_5]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QM2 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 1 model</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qm2 OCA], [https://pdbe.org/1qm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qm2 RCSB], [https://www.ebi.ac.uk/pdbsum/1qm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qm2 ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/1qm2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qm2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The NMR structures of the recombinant human prion protein, hPrP(23-230), and two C-terminal fragments, hPrP(90-230) and hPrP(121-230), include a globular domain extending from residues 125-228, for which a detailed structure was obtained, and an N-terminal flexibly disordered "tail." The globular domain contains three alpha-helices comprising the residues 144-154, 173-194, and 200-228 and a short anti-parallel beta-sheet comprising the residues 128-131 and 161-164. Within the globular domain, three polypeptide segments show increased structural disorder: i.e., a loop of residues 167-171, the residues 187-194 at the end of helix 2, and the residues 219-228 in the C-terminal part of helix 3. The local conformational state of the polypeptide segments 187-193 in helix 2 and 219-226 in helix 3 is measurably influenced by the length of the N-terminal tail, with the helical states being most highly populated in hPrP(23-230). When compared with the previously reported structures of the murine and Syrian hamster prion proteins, the length of helix 3 coincides more closely with that in the Syrian hamster protein whereas the disordered loop 167-171 is shared with murine PrP. These species variations of local structure are in a surface area of the cellular form of PrP that has previously been implicated in intermolecular interactions related both to the species barrier for infectious transmission of prion disease and to immune reactions.
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==Disease==
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NMR solution structure of the human prion protein.,Zahn R, Liu A, Luhrs T, Riek R, von Schroetter C, Lopez Garcia F, Billeter M, Calzolai L, Wider G, Wuthrich K Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):145-50. PMID:10618385<ref>PMID:10618385</ref>
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Known diseases associated with this structure: Creutzfeldt-Jakob disease OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176640 176640]], Gerstmann-Straussler disease OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176640 176640]], Huntington disease-like 1 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176640 176640]], Insomnia, fatal familial OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176640 176640]], Prion disease with protracted course OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176640 176640]], Retinitis pigmentosa-11 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=606419 606419]]
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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1QM2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QM2 OCA].
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</div>
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<div class="pdbe-citations 1qm2" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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NMR solution structure of the human prion protein., Zahn R, Liu A, Luhrs T, Riek R, von Schroetter C, Lopez Garcia F, Billeter M, Calzolai L, Wider G, Wuthrich K, Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):145-50. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10618385 10618385]
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*[[Prion 3D structures|Prion 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Liu, A.]]
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[[Category: Prions]]
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[[Category: Luhrs, T.]]
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[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Wuthrich, K.]]
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[[Category: Liu A]]
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[[Category: Zahn, R.]]
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[[Category: Luhrs T]]
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[[Category: brain]]
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[[Category: Wuthrich K]]
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[[Category: disease mutation]]
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[[Category: Zahn R]]
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[[Category: glycoprotein]]
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[[Category: gpi-anchor]]
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[[Category: polymorphism]]
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[[Category: prion]]
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[[Category: repeat]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:45:14 2008''
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Current revision

Human prion protein fragment 121-230

PDB ID 1qm2

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