User:Karl Oberholser/Sandbox 1
From Proteopedia
< User:Karl Oberholser(Difference between revisions)
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| + | <Structure load='PDB=1a7v' size='500' frame='true' align='right' caption='Insert caption here' scene='Globular_Proteins/Two_layers/2' /> | ||
| - | + | == Comparing same scene on two different pages == | |
| - | + | Original scene, Globular_Proteins/Two_layers_phobic/1, with green link 'hydrophobic side chain' was made for [[Globular Proteins]], and chain B is hide with only chain A being displayed. When the same scene <scene name='Globular_Proteins/Two_layers_phobic/1'> hydrophobic side chains</scene> is displayed on this page fragments of chain B in wireframe is displayed in addition to chain A. | |
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== Investigating Contact: == | == Investigating Contact: == | ||
| - | Fresh molecule load | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Initial/6'>initial 6 contact {:a} {:b} hbond plane</scene> | ||
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| - | Fresh molecule load | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Initial/7'>initial 7 contact clashes {:a} {:b} clash trim</scene> | ||
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| - | Started with initial/5 scene | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Initial/9'>initial 9 contact clashes off;</scene> | ||
| - | http://proteopedia.org/scripts/User:Karl_Oberholser/Sandbox_1/Initial/9.spt | ||
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| - | Fresh molecule load | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Contact_vdw/1'>contact vdw 1</scene> contact phobic {:a} {:b} vdw full | ||
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| - | Fresh molecule load | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Contact/1'>contact 1</scene> Leu heptads in spacefill | ||
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| - | Started with contact/1 | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Contact_clash/1'>contact clash 1</scene> contact phobic2 {:a} {:b} clash full | ||
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| - | Started with contact/1 | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Contact_hbond/1'>contact hbond 1</scene> contact hbond {:a} {:b} hbond connect | ||
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| - | Started with contact/1 | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Contact_vdw/3'>contact vdw 3</scene> contact vdw {:a} {:b} vdw surface | ||
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| - | Started with contact/1 | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Contact_hbond/2'>contact hbond 2</scene> contact {:a} {:b} hbond surface | ||
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| - | Started with contact/1 | ||
| - | <scene name='User:Karl_Oberholser/Sandbox_1/Contact_clash/2'>contact clash 2</scene> contact {:a} {:b} clash surface | ||
| - | + | <scene name='User:Karl_Oberholser/Sandbox_1/Two_layers_contact/1'>test contact vdw</scene> | |
| - | {{STRUCTURE_2wpy | PDB=2wpy | SCENE=}} | ||
| - | <br> | ||
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==Notes and References== | ==Notes and References== | ||
<references/> | <references/> | ||
Current revision
Contents |
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Comparing same scene on two different pages
Original scene, Globular_Proteins/Two_layers_phobic/1, with green link 'hydrophobic side chain' was made for Globular Proteins, and chain B is hide with only chain A being displayed. When the same scene is displayed on this page fragments of chain B in wireframe is displayed in addition to chain A.
Investigating Contact:
