4a5w

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[[Image:4a5w.png|left|200px]]
 
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==Crystal structure of C5b6==
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The line below this paragraph, containing "STRUCTURE_4a5w", creates the "Structure Box" on the page.
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<StructureSection load='4a5w' size='340' side='right'caption='[[4a5w]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[4a5w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4A5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4A5W FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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{{STRUCTURE_4a5w| PDB=4a5w | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4a5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4a5w OCA], [https://pdbe.org/4a5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4a5w RCSB], [https://www.ebi.ac.uk/pdbsum/4a5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4a5w ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/CO5_HUMAN CO5_HUMAN] Defects in C5 are the cause of complement component 5 deficiency (C5D) [MIM:[https://omim.org/entry/609536 609536]. A rare defect of the complement classical pathway associated with susceptibility to severe recurrent infections, predominantly by Neisseria gonorrhoeae or Neisseria meningitidis. Note=An association study of C5 haplotypes and genotypes in individuals with chronic hepatitis C virus infection shows that individuals homozygous for the C5_1 haplotype have a significantly higher stage of liver fibrosis than individuals carrying at least 1 other allele (PubMed:15995705).
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== Function ==
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[https://www.uniprot.org/uniprot/CO5_HUMAN CO5_HUMAN] Activation of C5 by a C5 convertase initiates the spontaneous assembly of the late complement components, C5-C9, into the membrane attack complex. C5b has a transient binding site for C6. The C5b-C6 complex is the foundation upon which the lytic complex is assembled. Derived from proteolytic degradation of complement C5, C5 anaphylatoxin is a mediator of local inflammatory process. It induces the contraction of smooth muscle, increases vascular permeability and causes histamine release from mast cells and basophilic leukocytes. C5a also stimulates the locomotion of polymorphonuclear leukocytes (chemokinesis) and direct their migration toward sites of inflammation (chemotaxis).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Activation of the complement system results in formation of membrane attack complexes (MACs), pores that disrupt lipid bilayers and lyse bacteria and other pathogens. Here, we present the crystal structure of the first assembly intermediate, C5b6, together with a cryo-electron microscopy reconstruction of a soluble, regulated form of the pore, sC5b9. Cleavage of C5 to C5b results in marked conformational changes, distinct from those observed in the homologous C3-to-C3b transition. C6 captures this conformation, which is preserved in the larger sC5b9 assembly. Together with antibody labeling, these structures reveal that complement components associate through sideways alignment of the central MAC-perforin (MACPF) domains, resulting in a C5b6-C7-C8beta-C8alpha-C9 arc. Soluble regulatory proteins below the arc indicate a potential dual mechanism in protection from pore formation. These results provide a structural framework for understanding MAC pore formation and regulation, processes important for fighting infections and preventing complement-mediated tissue damage.
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===Crystal structure of C5b6===
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Assembly and regulation of the membrane attack complex based on structures of C5b6 and sC5b9.,Hadders MA, Bubeck D, Roversi P, Hakobyan S, Forneris F, Morgan BP, Pangburn MK, Llorca O, Lea SM, Gros P Cell Rep. 2012 Mar 29;1(3):200-7. Epub 2012 Feb 23. PMID:22832194<ref>PMID:22832194</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4a5w" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_22468263}}, adds the Publication Abstract to the page
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*[[Complement C5 3D structures|Complement C5 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22468263 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22468263}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[4a5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4A5W OCA].
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==Reference==
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<ref group="xtra">PMID:022468263</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Bubeck, D.]]
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[[Category: Large Structures]]
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[[Category: Forneris, F.]]
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[[Category: Bubeck D]]
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[[Category: Gros, P.]]
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[[Category: Forneris F]]
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[[Category: Hadders, M A.]]
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[[Category: Gros P]]
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[[Category: Lea, S M.]]
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[[Category: Hadders MA]]
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[[Category: Llorca, O.]]
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[[Category: Lea SM]]
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[[Category: Pangburn, M.]]
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[[Category: Llorca O]]
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[[Category: Immune system]]
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[[Category: Pangburn M]]
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[[Category: Immunity]]
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[[Category: Membrane attack complex]]
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Current revision

Crystal structure of C5b6

PDB ID 4a5w

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