This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bfg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3bfg" [edit=sysop:move=sysop])
Current revision (14:45, 1 November 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bfg.png|left|200px]]
 
-
<!--
+
==class A beta-lactamase SED-G238C complexed with meropenem==
-
The line below this paragraph, containing "STRUCTURE_3bfg", creates the "Structure Box" on the page.
+
<StructureSection load='3bfg' size='340' side='right'caption='[[3bfg]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bfg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_sedlakii Citrobacter sedlakii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BFG FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MER:(4R,5S)-3-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-3-YL]SULFANYL}-5-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-4-METHYL-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC+ACID'>MER</scene></td></tr>
-
{{STRUCTURE_3bfg| PDB=3bfg | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfg OCA], [https://pdbe.org/3bfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bfg RCSB], [https://www.ebi.ac.uk/pdbsum/3bfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfg ProSAT]</span></td></tr>
-
 
+
</table>
-
===class A beta-lactamase SED-G238C complexed with meropenem===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q93PQ0_9ENTR Q93PQ0_9ENTR]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_14684905}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14684905 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfg_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_14684905}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3bfg]] is a 4 chain structure of [[Beta-lactamase]] with sequence from [http://en.wikipedia.org/wiki/Citrobacter_sedlakii Citrobacter sedlakii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFG OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bfg ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Beta-lactamase|Beta-lactamase]]
+
*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:014684905</ref><references group="xtra"/>
+
-
[[Category: Beta-lactamase]]
+
[[Category: Citrobacter sedlakii]]
[[Category: Citrobacter sedlakii]]
-
[[Category: Pernot, L.]]
+
[[Category: Large Structures]]
-
[[Category: Petrella, S.]]
+
[[Category: Pernot L]]
-
[[Category: Sougakoff, W.]]
+
[[Category: Petrella S]]
-
[[Category: Acyl-enzyme]]
+
[[Category: Sougakoff W]]
-
[[Category: Beta-lactamase]]
+
-
[[Category: Class some]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Meropenem]]
+
-
[[Category: Sed-g238c]]
+

Current revision

class A beta-lactamase SED-G238C complexed with meropenem

PDB ID 3bfg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bfg"
Personal tools