This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nyw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1nyw" [edit=sysop:move=sysop])
Current revision (08:00, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1nyw.png|left|200px]]
 
-
<!--
+
==The high resolution structures of RmlC from Streptoccus suis in complex with dTDP-D-glucose==
-
The line below this paragraph, containing "STRUCTURE_1nyw", creates the "Structure Box" on the page.
+
<StructureSection load='1nyw' size='340' side='right'caption='[[1nyw]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nyw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NYW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NYW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAU:2DEOXY-THYMIDINE-5-DIPHOSPHO-ALPHA-D-GLUCOSE'>DAU</scene></td></tr>
-
{{STRUCTURE_1nyw| PDB=1nyw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nyw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nyw OCA], [https://pdbe.org/1nyw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nyw RCSB], [https://www.ebi.ac.uk/pdbsum/1nyw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nyw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8GIQ0_STRSU Q8GIQ0_STRSU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/1nyw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nyw ConSurf].
 +
<div style="clear:both"></div>
-
===The high resolution structures of RmlC from Streptoccus suis in complex with dTDP-D-glucose===
+
==See Also==
-
 
+
*[[RmlC|RmlC]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12791259}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12791259 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12791259}}
+
-
 
+
-
==About this Structure==
+
-
[[1nyw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NYW OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:012791259</ref><references group="xtra"/>
+
[[Category: Streptococcus suis]]
[[Category: Streptococcus suis]]
-
[[Category: DTDP-4-dehydrorhamnose 3,5-epimerase]]
+
[[Category: Allen A]]
-
[[Category: Allen, A.]]
+
[[Category: Blankenfeldt W]]
-
[[Category: Blankenfeldt, W.]]
+
[[Category: Dong C]]
-
[[Category: Dong, C.]]
+
[[Category: Major LL]]
-
[[Category: Major, L L.]]
+
[[Category: Maskell D]]
-
[[Category: Maskell, D.]]
+
[[Category: Naismith JH]]
-
[[Category: Naismith, J H.]]
+
-
[[Category: Beta sheet]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Jelly roll-like structure]]
+

Current revision

The high resolution structures of RmlC from Streptoccus suis in complex with dTDP-D-glucose

PDB ID 1nyw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools