4du4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:57, 1 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4du4.jpg|left|200px]]
 
-
<!--
+
==RB69 DNA Polymerase Ternary Complex with dATP Opposite dT with 3-Deaza-adenine at the N-3 Position of Primer Strand==
-
The line below this paragraph, containing "STRUCTURE_4du4", creates the "Structure Box" on the page.
+
<StructureSection load='4du4' size='340' side='right'caption='[[4du4]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4du4]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DU4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DU4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4DU:1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-1H-IMIDAZO[4,5-C]PYRIDIN-4-AMINE'>4DU</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=DTP:2-DEOXYADENOSINE+5-TRIPHOSPHATE'>DTP</scene></td></tr>
-
{{STRUCTURE_4du4| PDB=4du4 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4du4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4du4 OCA], [https://pdbe.org/4du4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4du4 RCSB], [https://www.ebi.ac.uk/pdbsum/4du4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4du4 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
-
===RB69 DNA Polymerase Ternary Complex with dATP Opposite dT with 3-Deaza-adenine at the N-3 Position of Primer Strand===
+
==See Also==
-
 
+
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22571765}}, adds the Publication Abstract to the page
+
[[Category: Escherichia phage RB69]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 22571765 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Konigsberg WH]]
-
{{ABSTRACT_PUBMED_22571765}}
+
[[Category: Wang J]]
-
 
+
[[Category: Xia S]]
-
==About this Structure==
+
-
[[4du4]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_rb69 Enterobacteria phage rb69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DU4 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022571765</ref><references group="xtra"/>
+
-
[[Category: DNA-directed DNA polymerase]]
+
-
[[Category: Enterobacteria phage rb69]]
+
-
[[Category: Konigsberg, W H.]]
+
-
[[Category: Wang, J.]]
+
-
[[Category: Xia, S.]]
+
-
[[Category: 3-deaza-adenine]]
+
-
[[Category: Datp/dt]]
+
-
[[Category: Transferase-dna complex]]
+

Current revision

RB69 DNA Polymerase Ternary Complex with dATP Opposite dT with 3-Deaza-adenine at the N-3 Position of Primer Strand

PDB ID 4du4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4du4"
Personal tools