3rli

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (02:21, 21 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3rli.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of monoacylglycerol lipase from Bacillus sp. H257 in complex with PMSF==
-
The line below this paragraph, containing "STRUCTURE_3rli", creates the "Structure Box" on the page.
+
<StructureSection load='3rli' size='340' side='right'caption='[[3rli]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3rli]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._H-257 Bacillus sp. H-257]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RLI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.854&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=PMS:PHENYLMETHANESULFONIC+ACID'>PMS</scene></td></tr>
-
{{STRUCTURE_3rli| PDB=3rli | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rli OCA], [https://pdbe.org/3rli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rli RCSB], [https://www.ebi.ac.uk/pdbsum/3rli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rli ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MGLP_BAC25 MGLP_BAC25] Hydrolyzes monoacylglycerols, with the highest activity occurring with 1-monolauroylglycerol.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Monoacylglycerol lipases (MGLs) catalyse the hydrolysis of monoacylglycerol into free fatty acid and glycerol. MGLs have been identified throughout all genera of life and have adopted different substrate specificities depending on their physiological role. In humans, MGL plays an integral part in lipid metabolism affecting energy homeostasis, signalling processes and cancer cell progression. In bacteria, MGLs degrade short-chain monoacylglycerols which are otherwise toxic to the organism. We report the crystal structures of MGL from the bacterium Bacillus sp. H257 (bMGL) in its free form at 1.2A and in complex with phenylmethylsulfonyl fluoride at 1.8A resolution. In both structures, bMGL adopts an alpha/beta hydrolase fold with a cap in an open conformation. Access to the active site residues, which were unambiguously identified from the protein structure, is facilitated by two different channels. The larger channel constitutes the highly hydrophobic substrate binding pocket with enough room to accommodate monoacylglycerol. The other channel is rather small and resembles the proposed glycerol exit hole in human MGL. Molecular dynamics simulation of bMGL yielded open and closed states of the entrance channel and the glycerol exit hole. Despite differences in the number of residues, secondary structure elements, and low sequence identity in the cap region, this first structure of a bacterial MGL reveals striking structural conservation of the overall cap architecture in comparison with human MGL. Thus it provides insight into the structural conservation of the cap amongst MGLs throughout evolution and provides a framework for rationalising substrate specificities in each organism.
-
===Crystal structure of monoacylglycerol lipase from Bacillus sp. H257 in complex with PMSF===
+
The structure of monoacylglycerol lipase from Bacillus sp. H257 reveals unexpected conservation of the cap architecture between bacterial and human enzymes.,Rengachari S, Bezerra GA, Riegler-Berket L, Gruber CC, Sturm C, Taschler U, Boeszoermenyi A, Dreveny I, Zimmermann R, Gruber K, Oberer M Biochim Biophys Acta. 2012 Jul;1821(7):1012-21. Epub 2012 Apr 27. PMID:22561231<ref>PMID:22561231</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3rli" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
[[3rli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RLI OCA].
+
*[[Lipase 3D Structures|Lipase 3D Structures]]
-
[[Category: Acylglycerol lipase]]
+
== References ==
-
[[Category: Bacillus sp.]]
+
<references/>
-
[[Category: Bezerra, G A.]]
+
__TOC__
-
[[Category: Gruber, K.]]
+
</StructureSection>
-
[[Category: Oberer, M.]]
+
[[Category: Bacillus sp. H-257]]
-
[[Category: Rengachari, S.]]
+
[[Category: Large Structures]]
-
[[Category: Alpha/beta hydrolase]]
+
[[Category: Bezerra GA]]
-
[[Category: Hydrolase]]
+
[[Category: Gruber K]]
 +
[[Category: Oberer M]]
 +
[[Category: Rengachari S]]

Current revision

Crystal structure of monoacylglycerol lipase from Bacillus sp. H257 in complex with PMSF

PDB ID 3rli

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools