4arj

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[[Image:4arj.png|left|200px]]
 
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==Crystal structure of a pesticin (translocation and receptor binding domain) from Y. pestis and T4-lysozyme chimera==
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The line below this paragraph, containing "STRUCTURE_4arj", creates the "Structure Box" on the page.
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<StructureSection load='4arj' size='340' side='right'caption='[[4arj]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[4arj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4] and [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ARJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ARJ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.593&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_4arj| PDB=4arj | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4arj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4arj OCA], [https://pdbe.org/4arj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4arj RCSB], [https://www.ebi.ac.uk/pdbsum/4arj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4arj ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref> [https://www.uniprot.org/uniprot/Q57159_YERPE Q57159_YERPE]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Yersinia pestis produces and secretes a toxin named pesticin that kills related bacteria of the same niche. Uptake of the bacteriocin is required for activity in the periplasm leading to hydrolysis of peptidoglycan. To understand the uptake mechanism and to investigate the function of pesticin we combined crystal structures of the wildtype enzyme, active site mutants and chimera proteins with in vivo and in vitro activity assays. Wildtype pesticin comprises an elongated N-terminal translocation domain, the intermediate receptor binding domain and a C-terminal activity domain with structural analogy to lysozyme homologs. The full length protein is toxic to bacteria when taken up to the target site via the outer or the inner membrane. Uptake studies of deletion mutants in the translocation domain demonstrate their critical size for import. To further test the plasticity of pesticin during uptake into bacterial cells the activity domain was replaced by T4 lysozyme. Surprisingly, this replacement resulted in an active chimera protein which is not inhibited by the immunity protein Pim. Activity of pesticin and the chimera protein was blocked through introduction of disulfide bonds which suggests unfolding as the prerequisite to gain access to the periplasm. Pesticin, a muramidase was characterized by active site mutations demonstrating a similar but not identical residue pattern in comparison to T4 lysozyme.
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===Crystal structure of a pesticin (translocation and receptor binding domain) from Y. pestis and T4-lysozyme chimera===
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Structure and mechanistic studies of pesticin, a bacterial homolog of phage lysozymes.,Patzer SI, Albrecht R, Braun V, Zeth K J Biol Chem. 2012 May 16. PMID:22593569<ref>PMID:22593569</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4arj" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_22593569}}, adds the Publication Abstract to the page
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*[[Lysozyme 3D structures|Lysozyme 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22593569 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22593569}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Escherichia virus T4]]
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[[4arj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis,_enterobacteria_phage_t4 Yersinia pestis, enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ARJ OCA].
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[[Category: Large Structures]]
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[[Category: Yersinia pestis]]
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==Reference==
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[[Category: Albrecht R]]
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<ref group="xtra">PMID:022593569</ref><references group="xtra"/>
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[[Category: Braun V]]
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[[Category: Lysozyme]]
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[[Category: Patzer SI]]
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[[Category: Yersinia pestis, enterobacteria phage t4]]
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[[Category: Zeth K]]
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[[Category: Albrecht, R.]]
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[[Category: Braun, V.]]
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[[Category: Patzer, S I.]]
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[[Category: Zeth, K.]]
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[[Category: Hydrolase]]
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Current revision

Crystal structure of a pesticin (translocation and receptor binding domain) from Y. pestis and T4-lysozyme chimera

PDB ID 4arj

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