This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4f4r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:16, 14 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4f4r is ON HOLD
+
==Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop==
-
 
+
<StructureSection load='4f4r' size='340' side='right'caption='[[4f4r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
Authors: Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[4f4r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromohalobacter_salexigens_DSM_3043 Chromohalobacter salexigens DSM 3043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F4R FirstGlance]. <br>
-
Description: Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f4r OCA], [https://pdbe.org/4f4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f4r RCSB], [https://www.ebi.ac.uk/pdbsum/4f4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f4r ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DMGD_CHRSD DMGD_CHRSD] Has low dehydratase activity with D-mannonate and D-gluconate, suggesting that these are not physiological substrates and that it has no significant role in the in vivo degradation of these compounds. Has no detectable activity with a panel of 70 other acid sugars (in vitro).<ref>PMID:24697546</ref>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Chromohalobacter salexigens DSM 3043]]
 +
[[Category: Large Structures]]
 +
[[Category: Al Obaidi NF]]
 +
[[Category: Almo SC]]
 +
[[Category: Bhosle R]]
 +
[[Category: Chowdhury S]]
 +
[[Category: Evans B]]
 +
[[Category: Gerlt JA]]
 +
[[Category: Hammonds J]]
 +
[[Category: Hillerich B]]
 +
[[Category: Imker HJ]]
 +
[[Category: Love J]]
 +
[[Category: Morisco LL]]
 +
[[Category: Scott Glenn A]]
 +
[[Category: Seidel RD]]
 +
[[Category: Sojitra S]]
 +
[[Category: Toro R]]
 +
[[Category: Vetting MW]]
 +
[[Category: Washington E]]
 +
[[Category: Wasserman SR]]

Current revision

Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop

PDB ID 4f4r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools