This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1okd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1okd" [edit=sysop:move=sysop])
Current revision (05:48, 17 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1okd.png|left|200px]]
 
-
<!--
+
==NMR-structure of tryparedoxin 1==
-
The line below this paragraph, containing "STRUCTURE_1okd", creates the "Structure Box" on the page.
+
<StructureSection load='1okd' size='340' side='right'caption='[[1okd]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1okd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OKD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1okd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1okd OCA], [https://pdbe.org/1okd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1okd RCSB], [https://www.ebi.ac.uk/pdbsum/1okd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1okd ProSAT]</span></td></tr>
-
{{STRUCTURE_1okd| PDB=1okd | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===NMR-STRUCTURE OF TRYPAREDOXIN 1===
+
[https://www.uniprot.org/uniprot/O96438_CRIFA O96438_CRIFA]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14674746}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14674746 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/1okd_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_14674746}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1okd ConSurf].
-
[[1okd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OKD OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:014674746</ref><references group="xtra"/>
+
[[Category: Crithidia fasciculata]]
[[Category: Crithidia fasciculata]]
-
[[Category: Budde, H.]]
+
[[Category: Large Structures]]
-
[[Category: Flohe, L.]]
+
[[Category: Budde H]]
-
[[Category: Hecht, H J.]]
+
[[Category: Flohe L]]
-
[[Category: Krumme, D.]]
+
[[Category: Hecht H-J]]
-
[[Category: Menge, U.]]
+
[[Category: Krumme D]]
-
[[Category: Ohlenschlager, O.]]
+
[[Category: Menge U]]
-
[[Category: Ross, A.]]
+
[[Category: Ohlenschlager O]]
-
[[Category: Wissing, J.]]
+
[[Category: Ross A]]
-
[[Category: Wray, V.]]
+
[[Category: Wissing J]]
-
[[Category: Electron transport]]
+
[[Category: Wray V]]
-
[[Category: Nmr spectroscopy]]
+
-
[[Category: Trypanosomatid]]
+
-
[[Category: Tryparedoxin]]
+

Current revision

NMR-structure of tryparedoxin 1

PDB ID 1okd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1okd"
Personal tools