2j0e

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[[Image:2j0e.png|left|200px]]
 
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==Three dimensional structure and catalytic mechanism of 6- phosphogluconolactonase from Trypanosoma brucei==
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The line below this paragraph, containing "STRUCTURE_2j0e", creates the "Structure Box" on the page.
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<StructureSection load='2j0e' size='340' side='right'caption='[[2j0e]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2j0e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J0E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J0E FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_2j0e| PDB=2j0e | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j0e OCA], [https://pdbe.org/2j0e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j0e RCSB], [https://www.ebi.ac.uk/pdbsum/2j0e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j0e ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9GRG6_9TRYP Q9GRG6_9TRYP]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j0/2j0e_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j0e ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Enzymes from the pentose phosphate pathway (PPP) are potential drug targets for the development of new drugs against Trypanosoma brucei, the causative agent of African sleeping disease: for instance, the 6-phosphogluconate dehydrogenase is currently studied actively for such purposes. Structural and functional studies are necessary to better characterize the associated enzymes and compare them to their human homologues, in order to undertake structure-based drug design studies on such targets. In this context, the crystal structure of 6-phosphogluconolactonase (6PGL) from T. brucei, the second enzyme from PPP, was determined at 2.1 Angstroms resolution. Comparison of its sequence and structure to other related proteins in the 6PGL family with a known structure (Thermotoga maritima Tm6GPL 1PBT and Vibrio cholerae Vc6PGL (1Y89), which have not been discussed in print), or in the glucosamine-6-phosphate-deaminase family (hexameric Escherichia coli 1DEA and monomeric Bacillus subtilis 2BKV), allowed the identification of the 6PGL active site. In addition to the analysis of the crystal structure, 3D NMR interaction studies and docking experiments are reported here. Key residues involved in substrate binding or in catalysis were identified.
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===THREE DIMENSIONAL STRUCTURE AND CATALYTIC MECHANISM OF 6-PHOSPHOGLUCONOLACTONASE FROM TRYPANOSOMA BRUCEI===
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Three dimensional structure and implications for the catalytic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei.,Delarue M, Duclert-Savatier N, Miclet E, Haouz A, Giganti D, Ouazzani J, Lopez P, Nilges M, Stoven V J Mol Biol. 2007 Feb 23;366(3):868-81. Epub 2006 Nov 22. PMID:17196981<ref>PMID:17196981</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_17196981}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2j0e" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17196981 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_17196981}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2j0e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J0E OCA].
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==Reference==
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<ref group="xtra">PMID:017196981</ref><references group="xtra"/>
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[[Category: 6-phosphogluconolactonase]]
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[[Category: Trypanosoma brucei]]
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[[Category: Delarue, M.]]
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[[Category: Duclert-Savatier, N.]]
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[[Category: Giganti, D.]]
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[[Category: Haouz, A.]]
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[[Category: Lopez, P.]]
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[[Category: Miclet, E.]]
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[[Category: Nilges, M.]]
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[[Category: Ouazzani, J.]]
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[[Category: Stoven, V.]]
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[[Category: Catalytic mechanism]]
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[[Category: Hydrolase]]
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[[Category: Pentose phosphate pathway]]
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[[Category: Trypanosoma brucei]]
[[Category: Trypanosoma brucei]]
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[[Category: Zinc binding site]]
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[[Category: Delarue M]]
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[[Category: Duclert-Savatier N]]
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[[Category: Giganti D]]
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[[Category: Haouz A]]
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[[Category: Lopez P]]
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[[Category: Miclet E]]
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[[Category: Nilges M]]
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[[Category: Ouazzani J]]
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[[Category: Stoven V]]

Current revision

Three dimensional structure and catalytic mechanism of 6- phosphogluconolactonase from Trypanosoma brucei

PDB ID 2j0e

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