This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e8j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3e8j" [edit=sysop:move=sysop])
Current revision (12:59, 30 August 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3e8j.png|left|200px]]
 
-
<!--
+
==Coproporphyrinogen III oxidase from Leishmania naiffi==
-
The line below this paragraph, containing "STRUCTURE_3e8j", creates the "Structure Box" on the page.
+
<StructureSection load='3e8j' size='340' side='right'caption='[[3e8j]], [[Resolution|resolution]] 2.27&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3e8j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Leishmania_naiffi Leishmania naiffi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E8J FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.27&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_3e8j| PDB=3e8j | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e8j OCA], [https://pdbe.org/3e8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e8j RCSB], [https://www.ebi.ac.uk/pdbsum/3e8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e8j ProSAT]</span></td></tr>
-
 
+
</table>
-
===Coproporphyrinogen III oxidase from Leishmania naiffi===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/D0VWU6_9TRYP D0VWU6_9TRYP]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[3e8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Leishmania_naiffi Leishmania naiffi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E8J OCA].
+
Check<jmol>
-
[[Category: Coproporphyrinogen oxidase]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e8/3e8j_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e8j ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Leishmania naiffi]]
[[Category: Leishmania naiffi]]
-
[[Category: Larson, E T.]]
+
[[Category: Larson ET]]
-
[[Category: MSGPP, Medical Structural Genomics of Pathogenic Protozoa.]]
+
[[Category: Merritt EA]]
-
[[Category: Merritt, E A.]]
+
-
[[Category: Heme biosynthesis]]
+
-
[[Category: Heme metabolism]]
+
-
[[Category: Medical structural genomics of pathogenic protozoa consortium]]
+
-
[[Category: Msgpp]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Porphyrin biosynthesis]]
+

Current revision

Coproporphyrinogen III oxidase from Leishmania naiffi

PDB ID 3e8j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools