1e2y

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[[Image:1e2y.png|left|200px]]
 
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==Tryparedoxin peroxidase from Crithidia fasciculata==
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The line below this paragraph, containing "STRUCTURE_1e2y", creates the "Structure Box" on the page.
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<StructureSection load='1e2y' size='340' side='right'caption='[[1e2y]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1e2y]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E2Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E2Y FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_1e2y| PDB=1e2y | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e2y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e2y OCA], [https://pdbe.org/1e2y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e2y RCSB], [https://www.ebi.ac.uk/pdbsum/1e2y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e2y ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e2/1e2y_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e2y ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Tryparedoxin peroxidase (TryP) is a recently discovered 2Cys-peroxiredoxin involved in defence against oxidative stress in parasitic trypanosomatids. The crystal structure of recombinant Crithidia fasciculata TryP, in the reduced state, has been determined using multi-wavelength anomalous dispersion methods applied to a selenomethionyl derivative. The model comprises a decamer with 52 symmetry, ten chloride ions with 23 water molecules and has been refined, using data to 3.2 A resolution (1 A=0.1 nm), to an R-factor and R(free) of 27.3 and 28.6 %, respectively. Secondary structure topology places TryP along with tryparedoxin and glutathione peroxidase in a distinct subgroup of the thioredoxin super-family. The molecular details at the active site support ideas about the enzyme mechanism and comparisons with an oxidised 2Cys-peroxiredoxin reveal structural alterations induced by the change in oxidation state. These include a difference in quaternary structure from dimer (oxidised form) to decamer (reduced form). The 2Cys-peroxiredoxin assembly may prevent indiscriminate oligomerisation, localise ten peroxidase active sites and contribute to both the specificity of reduction by the redox partner tryparedoxin and attraction of peroxides into the active site.
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===TRYPAREDOXIN PEROXIDASE FROM CRITHIDIA FASCICULATA===
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The structure of reduced tryparedoxin peroxidase reveals a decamer and insight into reactivity of 2Cys-peroxiredoxins.,Alphey MS, Bond CS, Tetaud E, Fairlamb AH, Hunter WN J Mol Biol. 2000 Jul 21;300(4):903-16. PMID:10891277<ref>PMID:10891277</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 1e2y" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 10891277 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_10891277}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[1e2y]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E2Y OCA].
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==Reference==
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<ref group="xtra">PMID:010891277</ref><references group="xtra"/>
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[[Category: Crithidia fasciculata]]
[[Category: Crithidia fasciculata]]
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[[Category: Alphey, M S.]]
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[[Category: Large Structures]]
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[[Category: Bond, C S.]]
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[[Category: Alphey MS]]
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[[Category: Hunter, W N.]]
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[[Category: Bond CS]]
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[[Category: 2-cys peroxiredoxin]]
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[[Category: Hunter WN]]
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[[Category: Oxidoreductase]]
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Current revision

Tryparedoxin peroxidase from Crithidia fasciculata

PDB ID 1e2y

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