This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nal

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1nal" [edit=sysop:move=sysop])
Current revision (07:54, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1nal.png|left|200px]]
 
-
<!--
+
==THE THREE-DIMENSIONAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE FROM ESCHERICHIA COLI==
-
The line below this paragraph, containing "STRUCTURE_1nal", creates the "Structure Box" on the page.
+
<StructureSection load='1nal' size='340' side='right'caption='[[1nal]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nal]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NAL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NAL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1nal| PDB=1nal | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nal FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nal OCA], [https://pdbe.org/1nal PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nal RCSB], [https://www.ebi.ac.uk/pdbsum/1nal PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nal ProSAT]</span></td></tr>
-
 
+
</table>
-
===THE THREE-DIMENSIONAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE FROM ESCHERICHIA COLI===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/NANA_ECOLI NANA_ECOLI] Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate.[HAMAP-Rule:MF_01237]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_8081752}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 8081752 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/na/1nal_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_8081752}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1nal]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NAL OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nal ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Hydrogenase|Hydrogenase]]
+
*[[Dihydrodipicolinate synthase|Dihydrodipicolinate synthase]]
-
 
+
*[[N-acetylneuraminate lyase 3D structures|N-acetylneuraminate lyase 3D structures]]
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:008081752</ref><ref group="xtra">PMID:011170211</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: N-acetylneuraminate lyase]]
+
[[Category: Large Structures]]
-
[[Category: Colman, P M.]]
+
[[Category: Colman PM]]
-
[[Category: Izard, T.]]
+
[[Category: Izard T]]
-
[[Category: Lawrence, M C.]]
+
[[Category: Lawrence MC]]
-
[[Category: Lilley, G G.]]
+
[[Category: Lilley GG]]
-
[[Category: Malby, R L.]]
+
[[Category: Malby RL]]
-
[[Category: Lyase]]
+

Current revision

THE THREE-DIMENSIONAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE FROM ESCHERICHIA COLI

PDB ID 1nal

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools