2vkf

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[[Image:2vkf.png|left|200px]]
 
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==COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS==
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The line below this paragraph, containing "STRUCTURE_2vkf", creates the "Structure Box" on the page.
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<StructureSection load='2vkf' size='340' side='right'caption='[[2vkf]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vkf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum_R1 Halobacterium salinarum R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VKF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VKF FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CF2:2-DEOXY-5-O-{[2-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN-10(2H)-YL)ETHYL]CARBAMOYL}GUANOSINE'>CF2</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2vkf| PDB=2vkf | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vkf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vkf OCA], [https://pdbe.org/2vkf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vkf RCSB], [https://www.ebi.ac.uk/pdbsum/2vkf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vkf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9HPW4_HALSA Q9HPW4_HALSA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/2vkf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vkf ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Dodecin from Halobacterium salinarum is a dodecameric, hollow-spherical protein, which unspecifically adopts flavin molecules. Reduction of flavin dodecin holocomplexes induces dissociation into apododecin and free flavin. Unspecific binding and dissociation upon reduction were used as key properties to construct an electrochemically switchable surface, which was able to bind and release dodecin apoprotein depending on the applied potential. A flavin modified electrode surface (electrode-DNA-flavin) was generated by direct adsorption of double stranded DNA (ds-DNA) equipped with flavin and disulfide modifications at opposite ends. While the disulfide functionality enabled anchoring the ds-DNA at the gold surface, the flavin exposed at the surface served as the redox-active dodecin docking site. The structures of protein and flavin-DNA hybrid ligands were optimized and characterized by x-ray structural analysis of the holocomplexes. By surface plasmon resonance (SPR) spectroscopy, the adsorption of flavin modified DNA as well as the binding and the electrochemically induced release of dodecin apoprotein could be shown. When the surface immobilization protocol was changed from direct immobilization of the modified ds-DNA to a protocol, which included the hybridization of flavin and thiol modified DNA at the surface, the resulting monolayer was electrochemically inactive. A possible explanation for the strong influence of the surface immobilization protocol on addressing dodecin by the applied potential is that electron transfer is rather mediated by defects in the monolayer than modified ds-DNA.
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===COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS===
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Electrochemical switching of the flavoprotein dodecin at gold surfaces modified by flavin-DNA hybrid linkers.,Grininger M, Noll G, Trawoger S, Sinner EK, Oesterhelt D Biointerphases. 2008 Sep;3(3):51-8. PMID:20408700<ref>PMID:20408700</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20408700}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2vkf" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20408700 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20408700}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Halobacterium salinarum R1]]
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[[2vkf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VKF OCA].
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[[Category: Large Structures]]
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[[Category: Grininger M]]
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==Reference==
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[[Category: Noell G]]
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<ref group="xtra">PMID:020408700</ref><references group="xtra"/>
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[[Category: Oesterhelt D]]
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[[Category: Halobacterium salinarum]]
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[[Category: Sinner E]]
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[[Category: Grininger, M.]]
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[[Category: Trawoeger S]]
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[[Category: Noell, G.]]
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[[Category: Oesterhelt, D.]]
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[[Category: Sinner, E.]]
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[[Category: Trawoeger, S.]]
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[[Category: Biotechnological application of dodecin binding property]]
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[[Category: Electron transport]]
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[[Category: Flavin-dna ligand hybrid]]
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Current revision

COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS

PDB ID 2vkf

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