This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3rum

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:38, 14 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3rum.jpg|left|200px]]
 
-
<!--
+
==New strategy to analyze structures of glycopeptide antibiotic-target complexes==
-
The line below this paragraph, containing "STRUCTURE_3rum", creates the "Structure Box" on the page.
+
<StructureSection load='3rum' size='340' side='right'caption='[[3rum]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3rum]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Amycolatopsis_lurida Amycolatopsis lurida] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RUM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RUM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.851&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=BXY:ALPHA-D-ARABINOFURANOSE'>BXY</scene>, <scene name='pdbligand=CCS:CARBOXYMETHYLATED+CYSTEINE'>CCS</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=HTY:(BETAR)-BETA-HYDROXY-D-TYROSINE'>HTY</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MDF:META,+META-DI-HYDROXY-PHENYLALANINE'>MDF</scene>, <scene name='pdbligand=MP4:(2S)-AMINO(3,5-DIHYDROXY-4-METHYLPHENYL)ETHANOIC+ACID'>MP4</scene>, <scene name='pdbligand=OMX:(BETAR)-BETA-HYDROXY-L-TYROSINE'>OMX</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene>, <scene name='pdbligand=RST:RISTOSAMINE'>RST</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3rum| PDB=3rum | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rum OCA], [https://pdbe.org/3rum PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rum RCSB], [https://www.ebi.ac.uk/pdbsum/3rum PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rum ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.
-
===New strategy to analyze structures of glycopeptide antibiotic-target complexes===
+
==See Also==
-
 
+
*[[Maltose-binding protein 3D structures|Maltose-binding protein 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22352468}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 22352468 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_22352468}}
+
-
 
+
-
==About this Structure==
+
-
[[3rum]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Amycolatopsis_lurida Amycolatopsis lurida] and [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RUM OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022352468</ref><references group="xtra"/>
+
[[Category: Amycolatopsis lurida]]
[[Category: Amycolatopsis lurida]]
-
[[Category: Escherichia coli k-12]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Economou, N J.]]
+
[[Category: Large Structures]]
-
[[Category: Grasty, K C.]]
+
[[Category: Economou NJ]]
-
[[Category: Loll, P J.]]
+
[[Category: Grasty KC]]
-
[[Category: Nahoum, V.]]
+
[[Category: Loll PJ]]
-
[[Category: Weeks, S D.]]
+
[[Category: Nahoum V]]
-
[[Category: Antibiotic]]
+
[[Category: Weeks SD]]
-
[[Category: Carboxymethylation of cysteine]]
+
-
[[Category: Fusion]]
+
-
[[Category: Glycopeptide]]
+
-
[[Category: Native protein ligation]]
+
-
[[Category: Ristocetin]]
+
-
[[Category: Sugar binding protein-antibiotic complex]]
+

Current revision

New strategy to analyze structures of glycopeptide antibiotic-target complexes

PDB ID 3rum

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools