4dd8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:45, 6 November 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4dd8.jpg|left|200px]]
 
-
<!--
+
==ADAM-8 metalloproteinase domain with bound batimastat==
-
The line below this paragraph, containing "STRUCTURE_4dd8", creates the "Structure Box" on the page.
+
<StructureSection load='4dd8' size='340' side='right'caption='[[4dd8]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4dd8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DD8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DD8 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_4dd8| PDB=4dd8 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dd8 OCA], [https://pdbe.org/4dd8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dd8 RCSB], [https://www.ebi.ac.uk/pdbsum/4dd8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dd8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ADAM8_HUMAN ADAM8_HUMAN] Possible involvement in extravasation of leukocytes.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The role of ADAM-8 in cancer and inflammatory diseases such as allergy, arthritis and asthma makes it an attractive target for drug development. Therefore, the catalytic domain of human ADAM-8 was expressed, purified and crystallized in complex with a hydroxamic acid inhibitor, batimastat. The crystal structure of the enzyme-inhibitor complex was refined to 2.1 A resolution. ADAM-8 has an overall fold similar to those of other ADAM members, including a central five-stranded beta-sheet and a catalytic Zn(2+) ion. However, unique differences within the S1' binding loop of ADAM-8 are observed which might be exploited to confer specificity and selectivity to ADAM-8 competitive inhibitors for the treatment of diseases involving this enzyme.
-
===ADAM-8 metalloproteinase domain with bound batimastat===
+
Structure of human ADAM-8 catalytic domain complexed with batimastat.,Hall T, Shieh HS, Day JE, Caspers N, Chrencik JE, Williams JM, Pegg LE, Pauley AM, Moon AF, Krahn JM, Fischer DH, Kiefer JR, Tomasselli AG, Zack MD Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jun 1;68(Pt 6):616-21., Epub 2012 May 22. PMID:22684055<ref>PMID:22684055</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4dd8" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
[[4dd8]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DD8 OCA].
+
*[[A Disintegrin And Metalloproteinase 3D structures|A Disintegrin And Metalloproteinase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Caspers, N.]]
+
[[Category: Large Structures]]
-
[[Category: Chrencik, J E.]]
+
[[Category: Caspers N]]
-
[[Category: Day, J E.]]
+
[[Category: Chrencik JE]]
-
[[Category: Fischer, D H.]]
+
[[Category: Day JE]]
-
[[Category: Hall, T.]]
+
[[Category: Fischer DH]]
-
[[Category: Kiefer, J R.]]
+
[[Category: Hall T]]
-
[[Category: Krahn, J M.]]
+
[[Category: Kiefer JR]]
-
[[Category: Moon, A F.]]
+
[[Category: Krahn JM]]
-
[[Category: Pauley, A M.]]
+
[[Category: Moon AF]]
-
[[Category: Pegg, L E.]]
+
[[Category: Pauley AM]]
-
[[Category: Shieh, H S.]]
+
[[Category: Pegg LE]]
-
[[Category: Tomasselli, A G.]]
+
[[Category: Shieh HS]]
-
[[Category: Williams, J M.]]
+
[[Category: Tomasselli AG]]
-
[[Category: Zack, M D.]]
+
[[Category: Williams JM]]
-
[[Category: Aberrant neural cell signaling]]
+
[[Category: Zack MD]]
-
[[Category: Allergic asthma]]
+
-
[[Category: Alpha/beta motif]]
+
-
[[Category: Arthritis]]
+
-
[[Category: Batimastat]]
+
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
-
[[Category: Inflammation]]
+
-
[[Category: Metalloproteinase]]
+
-
[[Category: Tumorigenesis]]
+

Current revision

ADAM-8 metalloproteinase domain with bound batimastat

PDB ID 4dd8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4dd8"
Personal tools