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2bas

From Proteopedia

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(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_2bas", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
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[[Image:2bas.png|left|200px]]
 
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==Crystal Structure of the Bacillus subtilis YkuI Protein, with an EAL Domain.==
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The line below this paragraph, containing "STRUCTURE_2bas", creates the "Structure Box" on the page.
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<StructureSection load='2bas' size='340' side='right'caption='[[2bas]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2bas]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BAS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BAS FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.61&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_2bas| PDB=2bas | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bas FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bas OCA], [https://pdbe.org/2bas PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bas RCSB], [https://www.ebi.ac.uk/pdbsum/2bas PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bas ProSAT], [https://www.topsan.org/Proteins/MCSG/2bas TOPSAN]</span></td></tr>
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</table>
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===Crystal Structure of the Bacillus subtilis YkuI Protein, with an EAL Domain.===
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== Function ==
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[https://www.uniprot.org/uniprot/YKUI_BACSU YKUI_BACSU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 19244251 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/2bas_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_19244251}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[2bas]] is a 2 chain structure of [[C-di-GMP specific phosphodiesterases]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BAS OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bas ConSurf].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[C-di-GMP specific phosphodiesterases|C-di-GMP specific phosphodiesterases]]
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*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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<ref group="xtra">PMID:019244251</ref><references group="xtra"/>
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[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Anderson, W F.]]
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[[Category: Large Structures]]
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[[Category: Brunzelle, J S.]]
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[[Category: Anderson WF]]
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[[Category: Collart, F R.]]
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[[Category: Brunzelle JS]]
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[[Category: Joachimiak, A.]]
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[[Category: Collart FR]]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Joachimiak A]]
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[[Category: Miller, D J.]]
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[[Category: Miller DJ]]
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[[Category: Minasov, G.]]
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[[Category: Minasov G]]
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[[Category: Shuvalova, L.]]
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[[Category: Shuvalova L]]
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[[Category: Crystal structure]]
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[[Category: Eal domain]]
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[[Category: Mcsg]]
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[[Category: Midwest center for structural genomic]]
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[[Category: Protein structure initiative]]
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[[Category: Psi]]
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[[Category: Signaling protein]]
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[[Category: Structural genomic]]
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[[Category: Ykui protein]]
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Current revision

Crystal Structure of the Bacillus subtilis YkuI Protein, with an EAL Domain.

PDB ID 2bas

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