2a5z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_2a5z", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
Current revision (00:46, 21 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2a5z.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Protein of Unknown Function SO2946 from Shewanella oneidensis MR-1==
-
The line below this paragraph, containing "STRUCTURE_2a5z", creates the "Structure Box" on the page.
+
<StructureSection load='2a5z' size='340' side='right'caption='[[2a5z]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2a5z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A5Z FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.015&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2a5z| PDB=2a5z | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a5z OCA], [https://pdbe.org/2a5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a5z RCSB], [https://www.ebi.ac.uk/pdbsum/2a5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a5z ProSAT], [https://www.topsan.org/Proteins/MCSG/2a5z TOPSAN]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structure of the uncharacterized protein SO2946 from Shewanella oneidensis MR-1 was determined with single-wavelength anomalous diffraction (SAD) and refined to 2.0 A resolution. The SO2946 protein consists of a short helical N-terminal domain and a large C-terminal domain with the "jelly-roll" topology. The protein assembles into a propeller consisting of three C-terminal blades arranged around a central core formed by the N-terminal domains. The function of SO2946 could not be inferred from the sequence since the protein represents an orphan with no sequence homologs, but the protein's structure bears a fold similar to that of proteins containing carbohydrate-binding modules. Features such as fold conservation, the presence of a conserved groove and a metal binding region are indicative that SO2946 may be an enzyme and could be involved in binding carbohydrate molecules.
-
===Crystal Structure of Protein of Unknown Function SO2946 from Shewanella oneidensis MR-1===
+
Structure of SO2946 orphan from Shewanella oneidensis shows "jelly-roll" fold with carbohydrate-binding module.,Nocek B, Bigelow L, Abdullah J, Joachimiak A J Struct Funct Genomics. 2008 Dec;9(1-4):1-6. Epub 2008 Jun 20. PMID:18566914<ref>PMID:18566914</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18566914}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2a5z" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18566914 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18566914}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[2a5z]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A5Z OCA].
+
[[Category: Shewanella oneidensis MR-1]]
-
 
+
[[Category: Abdullah J]]
-
==Reference==
+
[[Category: Bigelow L]]
-
<ref group="xtra">PMID:018566914</ref><references group="xtra"/>
+
[[Category: Collart F]]
-
[[Category: Shewanella oneidensis]]
+
[[Category: Joachimiak A]]
-
[[Category: Abdullah, J.]]
+
[[Category: Nocek B]]
-
[[Category: Bigelow, L.]]
+
-
[[Category: Collart, F.]]
+
-
[[Category: Joachimiak, A.]]
+
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
-
[[Category: Nocek, B.]]
+
-
[[Category: Hypothetical protein]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Shewanella oneidensis mr-1]]
+
-
[[Category: So2946]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal Structure of Protein of Unknown Function SO2946 from Shewanella oneidensis MR-1

PDB ID 2a5z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2a5z"
Personal tools