2g5x

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[[Image:2g5x.png|left|200px]]
 
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==Crystal structure of lychnin a type 1 Ribosome Inactivating Protein (RIP)==
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The line below this paragraph, containing "STRUCTURE_2g5x", creates the "Structure Box" on the page.
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<StructureSection load='2g5x' size='340' side='right'caption='[[2g5x]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2g5x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Silene_chalcedonica Silene chalcedonica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G5X FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g5x OCA], [https://pdbe.org/2g5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g5x RCSB], [https://www.ebi.ac.uk/pdbsum/2g5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g5x ProSAT]</span></td></tr>
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{{STRUCTURE_2g5x| PDB=2g5x | SCENE= }}
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g5/2g5x_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g5x ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ribosome-inactivating proteins (RIPs) similar to those already known (Stirpe &amp; Barbieri (1986) FEBS Lett. 195, 1-8) were purified from the seeds of Asparagus officinalis (two proteins, asparin 1 and 2), of Citrullus colocynthis (two proteins, colocin 1 and 2), of Lychnis chalcedonica (lychnin) and of Manihot palmata (mapalmin), from the roots of Phytolacca americana (pokeweed antiviral protein from roots, PAP-R) and from the leaves of Bryonia dioica (bryodin-L). The two latter proteins can be considered as isoforms, respectively, of previously purified PAP, from the leaves of P. americana, and of bryodin-R, from the roots of B. dioica. All proteins have an Mr at approx, 30,000, and an alkaline isoelectric point. Bryodin-L, colocins, lychnin and mapalmin are glycoproteins. All RIPs inhibit protein synthesis by a rabbit reticulocyte lysate and phenylalanine polymerization by isolated ribosomes and alter rRNA in a similar manner as the A-chain of ricin and related toxins (Endo et al. (1987) J. Biol. Chem. 262, 5908-5912).
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===Crystal structure of lychnin a type 1 Ribosome Inactivating Protein (RIP)===
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Purification and properties of new ribosome-inactivating proteins with RNA N-glycosidase activity.,Bolognesi A, Barbieri L, Abbondanza A, Falasca AI, Carnicelli D, Battelli MG, Stirpe F Biochim Biophys Acta. 1990 Nov 30;1087(3):293-302. PMID:002248976<ref>PMID:002248976</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2g5x" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 2248976 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_2248976}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2g5x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lychnis_chalcedonica Lychnis chalcedonica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G5X OCA].
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[[Category: Silene chalcedonica]]
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[[Category: Bolognesi A]]
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==Reference==
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[[Category: Falini G]]
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<ref group="xtra">PMID:002248976</ref><ref group="xtra">PMID:012832768</ref><ref group="xtra">PMID:019616098</ref><references group="xtra"/>
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[[Category: Fermani S]]
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[[Category: Lychnis chalcedonica]]
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[[Category: Polito L]]
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[[Category: RRNA N-glycosylase]]
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[[Category: Ripamonti A]]
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[[Category: Bolognesi, A.]]
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[[Category: Stirpe F]]
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[[Category: Falini, G.]]
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[[Category: Tosi G]]
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[[Category: Fermani, S.]]
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[[Category: Polito, L.]]
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[[Category: Ripamonti, A.]]
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[[Category: Stirpe, F.]]
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[[Category: Tosi, G.]]
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[[Category: Alpha-beta protein]]
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[[Category: Hydrolase]]
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Current revision

Crystal structure of lychnin a type 1 Ribosome Inactivating Protein (RIP)

PDB ID 2g5x

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