2g5x
From Proteopedia
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- | [[Image:2g5x.png|left|200px]] | ||
- | < | + | ==Crystal structure of lychnin a type 1 Ribosome Inactivating Protein (RIP)== |
- | + | <StructureSection load='2g5x' size='340' side='right'caption='[[2g5x]], [[Resolution|resolution]] 1.70Å' scene=''> | |
- | You may | + | == Structural highlights == |
- | + | <table><tr><td colspan='2'>[[2g5x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Silene_chalcedonica Silene chalcedonica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G5X FirstGlance]. <br> | |
- | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | |
- | -- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g5x OCA], [https://pdbe.org/2g5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g5x RCSB], [https://www.ebi.ac.uk/pdbsum/2g5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g5x ProSAT]</span></td></tr> |
- | + | </table> | |
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g5/2g5x_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g5x ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Ribosome-inactivating proteins (RIPs) similar to those already known (Stirpe & Barbieri (1986) FEBS Lett. 195, 1-8) were purified from the seeds of Asparagus officinalis (two proteins, asparin 1 and 2), of Citrullus colocynthis (two proteins, colocin 1 and 2), of Lychnis chalcedonica (lychnin) and of Manihot palmata (mapalmin), from the roots of Phytolacca americana (pokeweed antiviral protein from roots, PAP-R) and from the leaves of Bryonia dioica (bryodin-L). The two latter proteins can be considered as isoforms, respectively, of previously purified PAP, from the leaves of P. americana, and of bryodin-R, from the roots of B. dioica. All proteins have an Mr at approx, 30,000, and an alkaline isoelectric point. Bryodin-L, colocins, lychnin and mapalmin are glycoproteins. All RIPs inhibit protein synthesis by a rabbit reticulocyte lysate and phenylalanine polymerization by isolated ribosomes and alter rRNA in a similar manner as the A-chain of ricin and related toxins (Endo et al. (1987) J. Biol. Chem. 262, 5908-5912). | ||
- | + | Purification and properties of new ribosome-inactivating proteins with RNA N-glycosidase activity.,Bolognesi A, Barbieri L, Abbondanza A, Falasca AI, Carnicelli D, Battelli MG, Stirpe F Biochim Biophys Acta. 1990 Nov 30;1087(3):293-302. PMID:002248976<ref>PMID:002248976</ref> | |
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 2g5x" style="background-color:#fffaf0;"></div> | ||
- | + | ==See Also== | |
- | + | *[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]] | |
- | + | == References == | |
- | + | <references/> | |
- | + | __TOC__ | |
- | + | </StructureSection> | |
- | == | + | [[Category: Large Structures]] |
- | [[ | + | [[Category: Silene chalcedonica]] |
- | + | [[Category: Bolognesi A]] | |
- | == | + | [[Category: Falini G]] |
- | < | + | [[Category: Fermani S]] |
- | [[Category: | + | [[Category: Polito L]] |
- | [[Category: | + | [[Category: Ripamonti A]] |
- | [[Category: Bolognesi | + | [[Category: Stirpe F]] |
- | [[Category: Falini | + | [[Category: Tosi G]] |
- | [[Category: Fermani | + | |
- | [[Category: Polito | + | |
- | [[Category: Ripamonti | + | |
- | [[Category: Stirpe | + | |
- | [[Category: Tosi | + | |
- | + | ||
- | + |
Current revision
Crystal structure of lychnin a type 1 Ribosome Inactivating Protein (RIP)
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