This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2g38

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2g38" [edit=sysop:move=sysop])
Current revision (09:26, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2g38.png|left|200px]]
 
-
<!--
+
==A PE/PPE Protein Complex from Mycobacterium tuberculosis==
-
The line below this paragraph, containing "STRUCTURE_2g38", creates the "Structure Box" on the page.
+
<StructureSection load='2g38' size='340' side='right'caption='[[2g38]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2g38]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G38 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G38 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
{{STRUCTURE_2g38| PDB=2g38 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g38 OCA], [https://pdbe.org/2g38 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g38 RCSB], [https://www.ebi.ac.uk/pdbsum/2g38 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g38 ProSAT], [https://www.topsan.org/Proteins/ISFI/2g38 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===A PE/PPE Protein Complex from Mycobacterium tuberculosis===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q7D756_MYCTO Q7D756_MYCTO]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16690741}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16690741 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g3/2g38_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16690741}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[2g38]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G38 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g38 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[User:Michael Strong|User:Michael Strong]]
+
*[[PE/PPE Protein Complex|PE/PPE Protein Complex]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:016690741</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Mycobacterium tuberculosis]]
+
[[Category: Mycobacterium tuberculosis H37Rv]]
-
[[Category: Eisenberg, D.]]
+
[[Category: Eisenberg D]]
-
[[Category: Sawaya, M R.]]
+
[[Category: Sawaya MR]]
-
[[Category: Strong, M.]]
+
[[Category: Strong M]]
-
[[Category: TBSGC, TB Structural Genomics Consortium.]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Protein-protein complex]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Tb structural genomics consortium]]
+
-
[[Category: Tbsgc]]
+
-
[[Category: Unknown function]]
+

Current revision

A PE/PPE Protein Complex from Mycobacterium tuberculosis

PDB ID 2g38

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools