3bre

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[[Image:3bre.png|left|200px]]
 
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==Crystal Structure of P.aeruginosa PA3702==
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The line below this paragraph, containing "STRUCTURE_3bre", creates the "Structure Box" on the page.
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<StructureSection load='3bre' size='340' side='right'caption='[[3bre]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3bre]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BRE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BRE FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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{{STRUCTURE_3bre| PDB=3bre | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bre FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bre OCA], [https://pdbe.org/3bre PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bre RCSB], [https://www.ebi.ac.uk/pdbsum/3bre PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bre ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9HXT9_PSEAE Q9HXT9_PSEAE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/3bre_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bre ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Environmental signals that trigger bacterial pathogenesis and biofilm formation are mediated by changes in the level of cyclic dimeric guanosine monophosphate (c-di-GMP), a unique eubacterial second messenger. Tight regulation of cellular c-di-GMP concentration is governed by diguanylate cyclases and phosphodiesterases, which are responsible for its production and degradation, respectively. Here, we present the crystal structure of the diguanylate cyclase WspR, a conserved GGDEF domain-containing response regulator in Gram-negative bacteria, bound to c-di-GMP at an inhibitory site. Biochemical analyses revealed that feedback regulation involves the formation of at least three distinct oligomeric states. By switching from an active to a product-inhibited dimer via a tetrameric assembly, WspR utilizes a novel mechanism for modulation of its activity through oligomerization. Moreover, our data suggest that these enzymes can be activated by phosphodiesterases. Thus, in addition to the canonical pathways via phosphorylation of the regulatory domains, both product and enzyme concentration contribute to the coordination of c-di-GMP signaling. A structural comparison reveals resemblance of the oligomeric states to assemblies of GAF domains, widely used regulatory domains in signaling molecules conserved from archaea to mammals, suggesting a similar mechanism of regulation.
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===Crystal Structure of P.aeruginosa PA3702===
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Phosphorylation-independent regulation of the diguanylate cyclase WspR.,De N, Pirruccello M, Krasteva PV, Bae N, Raghavan RV, Sondermann H PLoS Biol. 2008 Mar 25;6(3):e67. PMID:18366254<ref>PMID:18366254</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18366254}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3bre" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18366254 is the PubMed ID number.
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{{ABSTRACT_PUBMED_18366254}}
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==About this Structure==
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[[3bre]] is a 2 chain structure of [[Response regulator]] with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BRE OCA].
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==See Also==
==See Also==
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*[[Response regulator|Response regulator]]
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*[[Chemotaxis protein 3D structures|Chemotaxis protein 3D structures]]
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*[[WspR|WspR]]
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:018366254</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Pseudomonas aeruginosa]]
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[[Category: Large Structures]]
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[[Category: Bae, N.]]
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[[Category: Pseudomonas aeruginosa PAO1]]
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[[Category: De, N.]]
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[[Category: Bae N]]
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[[Category: Krasteva, P V.]]
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[[Category: De N]]
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[[Category: Pirruccello, M.]]
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[[Category: Krasteva PV]]
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[[Category: Raghavan, R V.]]
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[[Category: Pirruccello M]]
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[[Category: Sondermann, H.]]
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[[Category: Raghavan RV]]
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[[Category: Protein-nucleotide complex]]
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[[Category: Sondermann H]]
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[[Category: Signaling protein]]
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Current revision

Crystal Structure of P.aeruginosa PA3702

PDB ID 3bre

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