This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.




2fht

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:56, 21 November 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2fht.jpg|left|200px]]<br /><applet load="2fht" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2fht, resolution 1.7&Aring;" />
 
-
'''Crystal Structure of Viral Macrophage Inflammatory Protein-II'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Viral Macrophage Inflammatory Protein-II==
-
2FHT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHT OCA].
+
<StructureSection load='2fht' size='340' side='right'caption='[[2fht]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Reference==
+
<table><tr><td colspan='2'>[[2fht]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_herpesvirus_8_strain_GK18 Human herpesvirus 8 strain GK18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FHT FirstGlance]. <br>
-
Crystal structure of chemically synthesized vMIP-II., Li Y, Liu D, Cao R, Kumar S, Dong C, An J, Wilson SR, Gao YG, Huang Z, Proteins. 2007 Apr 1;67(1):243-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17243149 17243149]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
[[Category: Single protein]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fht FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fht OCA], [https://pdbe.org/2fht PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fht RCSB], [https://www.ebi.ac.uk/pdbsum/2fht PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fht ProSAT]</span></td></tr>
-
[[Category: Cao, R.]]
+
</table>
-
[[Category: Dong, C.Z.]]
+
== Function ==
-
[[Category: Gao, Y.G.]]
+
[https://www.uniprot.org/uniprot/VMI2_HHV8P VMI2_HHV8P] Blocks infection by several different human immunodeficiency virus type 1 (HIV-1) strains. This occurs because vMIP-II binds to a wide range of chemokine receptors. May form part of the response to host defenses contributing to virus-induced neoplasia and may have relevance to KSHV and HIV-I interactions.
-
[[Category: Huang, Z.]]
+
== Evolutionary Conservation ==
-
[[Category: Kumar, S.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Li, Y.]]
+
Check<jmol>
-
[[Category: Liu, D.]]
+
<jmolCheckbox>
-
[[Category: wilson, S.R.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fh/2fht_consurf.spt"</scriptWhenChecked>
-
[[Category: anti-hiv]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: chemokine]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: herpesvirus]]
+
</jmolCheckbox>
-
 
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fht ConSurf].
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 17:25:13 2008''
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Human herpesvirus 8 strain GK18]]
 +
[[Category: Large Structures]]
 +
[[Category: Cao R]]
 +
[[Category: Dong CZ]]
 +
[[Category: Gao YG]]
 +
[[Category: Huang Z]]
 +
[[Category: Kumar S]]
 +
[[Category: Li Y]]
 +
[[Category: Liu D]]
 +
[[Category: Wilson SR]]

Current revision

Crystal Structure of Viral Macrophage Inflammatory Protein-II

PDB ID 2fht

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools